Pairwise Alignments

Query, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

Subject, 814 a.a., Ribonuclease R from Acinetobacter radioresistens SK82

 Score =  302 bits (773), Expect = 6e-86
 Identities = 230/766 (30%), Positives = 357/766 (46%), Gaps = 75/766 (9%)

Query: 11  APARAKVRPAGFPTRQQVMDFITESDTPAGKREIAKAFGLKGQEKI-ALKALLKDMADEG 69
           A A A+      P+R  +   I +   P    ++ + F ++ Q+ I AL   L  M  +G
Sbjct: 22  AKAEAERYDNPIPSRILIQKTIEQLQAPQSHADLVEHFEIQDQKSIDALNHRLIAMVRDG 81

Query: 70  LLDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRIRVVERGKRGAL 129
            L +     F  +  +P          + T  I T     A+      + + ER  R   
Sbjct: 82  QL-VKDGFKFQLVADLPTY--------EATVYINTKGMGIAQIDGQDNLYLPERELRLVF 132

Query: 130 TIGDRILAR---TEEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLWLRPV----DKRI 182
             GDR+  R   T+  GK W     + + +  + ++G ++ M +G+ +++P      + I
Sbjct: 133 N-GDRVRVRQTSTDRKGKAW-GFITEVIQRRVKQIIGQLK-MYEGEYFIQPSMPNQHQPI 189

Query: 183 RKDTPISDIGTAKKGDLVLAEPTGRPPR---ISARVTDILGDPFAPRSFSLIAIHKHGIP 239
             +  + D      GD+V       P R    +  +   + D           I ++G+P
Sbjct: 190 TLEKELIDHAKINLGDMVRVAIDDYPTREEFSTGHIVQSMADKADTEIIIPQTILEYGLP 249

Query: 240 HVFPEAVEEEAVTASKLPLHEDK--REDLRHLPIVAIDPVDARDHDDAVWAAPDEDPTNE 297
           + FPE V +EA +  K P  +D+  R DLR L +V ID  DARD DDAV+A    +    
Sbjct: 250 YEFPEEVLKEAASF-KEPDEQDRQGRVDLRDLALVTIDGEDARDFDDAVYA----EKRPG 304

Query: 298 GGYKAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGQDR 357
           GGY+ +VAIADVS+YVR G+AL+ EA +RG SVYFP  V+PMLP  LS+ +CSL    DR
Sbjct: 305 GGYRVVVAIADVSHYVRLGTALNEEAEERGTSVYFPHFVLPMLPEALSNGLCSLNPHLDR 364

Query: 358 AAMACHLVIDAQGKVKSFRFSRAIIRVAAVLAYENAQAAIDALSSVRPEPVEGQGRAEGE 417
             M C L +   G+V  + F  A++   A L Y    A +D  S   PE           
Sbjct: 365 LCMVCDLNVSRAGRVTQYEFYPAVMHSKARLTYTQVAAYLDGDSQAVPED---------- 414

Query: 418 AASPAAQQAASTSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPERRVVLDEW 477
                                V  +L  L+  + +L++ R KR  +  +  E  +  DE 
Sbjct: 415 -------------------RTVRKSLNTLFQLYQVLKELRAKRHAMEFETVETYMTFDEL 455

Query: 478 GKIVSVAVRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKLVALKEYL 537
           G I  +  R R +AH LIE+ M+ ANVAAA+     + P++YRVH+ P   +   +++Y+
Sbjct: 456 GGIKEILPRSRNEAHKLIEECMLLANVAAAEYSLKNEIPMLYRVHDAPEFSRTQKVRDYV 515

Query: 538 ATFDIDFALGQVIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMGHFGLALG 597
               ++F   +    + +  +I+   +  +   I   +LRS  QAYY P+N+GH+GLA  
Sbjct: 516 KLLGLNFP--EQPTQADYQAVIEATKDRIDAPSIHAVLLRSMMQAYYGPENIGHYGLAYE 573

Query: 598 SYAHFTSPIRRYADLLVHRALVGAYDLELPAPKGKAIPDRSSLSQEDYENMGRVGEMISG 657
           +Y HFTSPIRRY DLL+HRA+      +  A  G                +   GE  S 
Sbjct: 574 AYTHFTSPIRRYPDLLLHRAIKAHLKHKQFALSG--------------NQLAEAGEHYSQ 619

Query: 658 HERRAMEAERETIDRYVAAFLSAHVGEVVKARITGVQNFGFFATVEGLGGDGLVPVSTLG 717
            ERRA EA R         ++  H+GE     I+ V  FG F T++ L  DG++ VS LG
Sbjct: 620 TERRADEASRSVTMWLKCHYMQQHLGEEFDGIISAVTEFGLFVTLKDLYVDGMLHVSQLG 679

Query: 718 AEHFFFDEAGKALQGVESGDRYTVGQRLELRLAEADPINGALRFEL 763
            + F +D+  ++L G   G  + +G  + +++A        + FEL
Sbjct: 680 DDFFVYDQPSQSLIGQSRGQVFGLGDEVRIKVAGVQLEERKIDFEL 725