Pairwise Alignments

Query, 246 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 239 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

 Score =  130 bits (327), Expect = 2e-35
 Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 5/238 (2%)

Query: 6   ILLADDDAALLTSLSDYFGRYGFDVDTAANLADMRRLSEEGHYDLLIAEPMMPGQHTAGL 65
           +L+ DDD  +   L DY    G++V  AA+   MR        +L++ + M+PG+    L
Sbjct: 5   LLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSL 64

Query: 66  LREFAFERRIPVIIHSRASSDIDRILGLEMGAEDYLTKPCNARELLARANAALRARRRQA 125
            R+      + VI+ S   S +DRI+GLE+GA+DYL KP   REL+AR  A LR  +R  
Sbjct: 65  CRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQR-- 122

Query: 126 DAGTMATAPRDNSWVAFQGWRFDLTTRQLFDPSGGTISLSEGEYQLLRVFVANARQVLNR 185
             GT A  P  ++ + F G+R +   R L  P G T++L   +Y++LR  +    +V++R
Sbjct: 123 -LGTSAEEPMVDAQL-FAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSR 180

Query: 186 HQLLDQVYGASSDHYDRAIDVQLCRLRRKLSAGGLKGQTIRTVRNEGYIF-VHPVTAG 242
            QL    +G      DR++D+ + RLR++L         I T+RNEGY+  + P+ AG
Sbjct: 181 DQLTRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGTAQILTIRNEGYLLSLAPLAAG 238