Pairwise Alignments

Query, 538 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 447 a.a., carbohydrate-selective porin from Pseudomonas putida KT2440

 Score =  117 bits (294), Expect = 7e-31
 Identities = 103/411 (25%), Positives = 171/411 (41%), Gaps = 23/411 (5%)

Query: 143 RASLKQKGLTFSLSYKAEAMDNLDGGV--ERGADYVHELTLQMHFDLDKLVGLRGWTLHA 200
           R  L  KG  F+L Y  E   NL GG   ++ A Y  +  L  H DL K++G        
Sbjct: 45  RTELLDKGYDFTLDYVGEVAGNLHGGYNDDKTARYSDQFALGAHLDLQKILGWHDAEFKL 104

Query: 201 LVMNRVGHQVSTDRLGE----RYINLMEVYGLTGGVAAHLVDFYLQKTMLDGRLDVAVGR 256
            +  R G  +S DR+ +    ++ ++ EV+G   G    L   ++++   DG LDV  GR
Sbjct: 105 AITERSGRNLSNDRISDPRAGQFSSVQEVWGR--GQTWRLTQMWIKQKYFDGALDVKFGR 162

Query: 257 MSLTHVFATSPLLCSFMVTCSAPVILKRAPGFAVYPKATMGGRVRLRPTRDTSVQLGVYQ 316
                 F + P     +  C + V       +  +P +    RV+   T +  VQ+G ++
Sbjct: 163 FGEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYNITPEFFVQVGAFE 222

Query: 317 VTPL-ASNPSGWAWGSERTTGVMLPIEFTWQPFLTDKKLPGHYVFGYARDTSRYADLM-- 373
             P      +G+      T G +LP+E  W P +    LPG Y  GY   T++  D+   
Sbjct: 223 QNPSNLETGNGFKLSGSGTKGAILPVEAVWSPKVNG--LPGEYRLGYYYSTAKADDVYDD 280

Query: 374 TTGAANAIKRDSTPPSAPMNMYWFEGDQMIYRKGGSDQMSGGYLMFGYVHNTPRVAALSD 433
             G   A+  ++    +  + +W    Q +   GG   ++ G  +F       +   + D
Sbjct: 281 VNGNPQALTGEAFKSHSSKHGWWVVAQQQVTAHGGD--VNRGLSLFANFTVHDKATNVVD 338

Query: 434 QYY-AGFSFNGVVPHRDTDRFGVLWSWYHVSDRLR-----LNQMYLIDSGQSLGASVLAP 487
            Y   G  + G    R  D  G   +  HV+D ++     LN    I+   + G   L  
Sbjct: 339 NYQQVGLVYKGAFDARPKDDIGFGVARIHVNDDVKKRAELLNAQSGINDYDNPGFVPL-- 396

Query: 488 QTSSHVIEAYYSIDVMPGLQLQPEFDYMIRPGETTKTPDATLLGMKIIANF 538
           Q + +  E YY   V   L ++P   Y+  PG   +  +A + G+KI ++F
Sbjct: 397 QRTEYNAELYYGFHVTNWLTVRPNLQYIKSPGGVDEVDNALVAGLKIQSSF 447