Pairwise Alignments

Query, 232 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Sphingobium sp. HT1-2

Subject, 258 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

 Score =  143 bits (361), Expect = 3e-39
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 31/243 (12%)

Query: 5   PMIET--PSPNYDERSLPITMLVLHYTGMPDAASAINWLANAESKVSAHYVVTED--GQI 60
           P ++T  PS N+D R   +  +++HYT   +   ++  L + +  VS+HY++ +D  G I
Sbjct: 20  PRMDTSHPSVNHDNR---VQFVIVHYTST-NLERSLALLTHGQ--VSSHYLIGDDASGTI 73

Query: 61  IRMVAEDKRAWHAGRSHWRGIDDVNSASIGIEIVNPGHEWG-----YRPFPEAQMGSLIP 115
            ++V E +RAWHAG S W G   +NS+SIGIEIVNPG++       + P+ EAQ+ SL+ 
Sbjct: 74  YKLVDESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGYKDTPTGRVWYPYSEAQVKSLVV 133

Query: 116 LVHDIVQRHRITRGNIVGHSDIAPARKQDPGELFPWGQLARLRL-------ALPRPTKNL 168
           L+ DI +R+ I   NI+GHSDIAP RK DPG LFPW +LA   L       A+ R     
Sbjct: 134 LLKDISKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRLADEGLGVWPNAQAVARFQVQY 193

Query: 169 MDPHWTDSGFMLALERFGY--------DIAEPEPAVVAFQRRFRPELIDGVIDGECRAIL 220
                + + F   L R GY        D+A     + AFQ RFRP L DG  D E  AIL
Sbjct: 194 AAELPSITWFQEELARLGYQTPQTGELDVA-TRHVIAAFQMRFRPSLFDGTPDAESAAIL 252

Query: 221 LAL 223
            AL
Sbjct: 253 RAL 255