Pairwise Alignments

Query, 1054 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  357 bits (916), Expect = e-102
 Identities = 274/1053 (26%), Positives = 499/1053 (47%), Gaps = 82/1053 (7%)

Query: 5    NISAWAIRNPVPPLVLFAALMLAGVVSFLRMDINQNPDISFPMVSVTVSQPGAAPTELET 64
            N+S   I  PV   +   A++LAG++++  + ++  P + +P + V    PGA+P  + +
Sbjct: 2    NLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMTS 61

Query: 65   QVTQRVEAAVRGISGVEDITSFASEGQSLTNVQFKIGTPVDRAVNDVKNAVDQIRSDLPD 124
             VT  +E     + G+E + S +S G S+  ++F +   +D A   V+ A++   + LP 
Sbjct: 62   AVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLPS 121

Query: 125  GILEPQV-QRIDVDGGPIAYFSAEATDMTLEELSWYVDNTVAKRLLSVSGMAAVRRGGGV 183
             +  P V  +++    P+   +  +  M L +L+  VD  VA++L  +SG+  V   GG 
Sbjct: 122  DLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGGQ 181

Query: 184  SREIRVILDPARLQAYGVTAAQVNAQLSQVNINAAGGRTEIAGAEQSIRVLGNARNAHDL 243
             + +R+ ++   L A G+    V   +   N+N   G  +       +      R+  + 
Sbjct: 182  RQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSPEEY 241

Query: 244  GQTQIAISGGRTVKLADIADVRDMYAEQRSLALMNGRQVTSFSLEKAKGSSDVTVYDDAM 303
                +A + G  ++L D+A++ D    +R  A  N       ++++  G++ + V D   
Sbjct: 242  ANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDRIK 301

Query: 304  KVLDKLKKENPK-VQFKQLYSSVEYTRGQYHSAMSAMIEGAVLAVVIVFLFLRDWRATMI 362
             +L  +    P  +    L    +  R         ++   VL V++ F+FLR + AT+I
Sbjct: 302  GLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSATLI 361

Query: 363  SALAIPLSAIPSFWFMDMLGFTLNGISLLALSLVAGVLVDDAIVEIENIVRHMRMGKSAY 422
             ++A+PLS I +F  M + GF++N ++L+AL++  G +VDDAIV +ENI RH+  G++  
Sbjct: 362  PSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGETPM 421

Query: 423  QASIDAADEIGLAVLATTMAIVAVFLPVALMPGISGQFFIQFGMTVVVSVLMSLAVARLI 482
            QA++  A +IG  +++ T +++AV +P+  M  + G+ F +F +T+ V++L+SL V+  +
Sbjct: 422  QAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTL 481

Query: 483  TPMIAAYFLKAH------GEASHGEG----WLMDRYMSVLHWSLDQRKAKARRARGGFRN 532
            TPM+ A  LK        G      G    WL+  Y S L W L                
Sbjct: 482  TPMMCARLLKREPKEEEQGRFYRASGAWIDWLIQHYGSALQWVLK--------------- 526

Query: 533  RFVAFFVDHRVWTLGIGMLAFVATLFAFGTLPMTFQPTINTDFSQVKIETVPGSTLEQTT 592
                    H+  TL + + + V T+F +  +P  F P  +T   Q   E    ++    +
Sbjct: 527  --------HQPLTLLVAVASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMS 578

Query: 593  AITRKVADMLAADTDVVE-AAFADIEPTSADI-----FLTLKK--TRPMSSVDWERKIAP 644
               + ++ ++  D  V   +++  ++  +A +      + LK    R +S+ +   ++ P
Sbjct: 579  ERQQALSKVILQDPAVQSLSSYIGVDGDNATLNSGRLLINLKPHGERDVSASEVISRLQP 638

Query: 645  KFQTIADARVNFQSQSGGGFGRDII-----MMYGSDDPELLEKTANQLVHEMAGIRELRA 699
            +   +   R+  Q          +          S D +LL + + +LV  +    EL  
Sbjct: 639  QVDRLVGIRLFMQPVQDLSIEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELAD 698

Query: 700  PRVQGDMQRP--EIIIKPRLDLAASMGVTTAALSQSIRIATIGDIDQNVAKFSLSDRQIP 757
              V  D+Q    ++ +    D+A+ +G++ + ++ ++  A                RQI 
Sbjct: 699  --VASDLQDKGLQVYLVIDRDMASRLGISVSQITNALYDA-------------FGQRQIS 743

Query: 758  IRVALAEDSR-----KDIATI-----ENMPVPTVSGGSVPLKVVADISFGAGPTQIRRYN 807
                 A   R      D ATI     E++ V    GG V L  +A I        I    
Sbjct: 744  TIYTQASQYRVVLQSSDAATIGPQALESIHVKATDGGQVRLSALARIEQRQAQLAISHIG 803

Query: 808  QIRRVVVGADLAPGIVTSQANQKINELPTMKAIKEGRIQGVQ-KIEAGDSKFQAEMLTNF 866
            Q   V +  +LA G    +A Q I ++   K I  G   GVQ + +     FQA  L++ 
Sbjct: 804  QFPAVTLSFNLAHGASLGEAVQVIEQV--QKDI--GMPLGVQTRFQGAAEAFQAS-LSST 858

Query: 867  VIAVFSGIMLVLAVLVLLYKRIMPPFVNLGSLLLAPLGGAIALHIAGQPMSLPVFIGLLM 926
            ++ + + ++ +  VL +LY+  + P   L +L  A +G  +AL I+G  + +   IG+++
Sbjct: 859  LLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGALLALLISGNDLGMIAIIGIIL 918

Query: 927  LLGIVAKNSILVIDFALE-EMEKGVPKQEAILDAGHKRAQPIVMTTVAMVAGMVPTALSL 985
            L+GIV KN+I++IDFALE E  +G+  ++AI  A   R +PI+MTT+A + G VP  L+ 
Sbjct: 919  LIGIVKKNAIMMIDFALEAERNQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLAT 978

Query: 986  SGDAAWRAPMGITVIGGLLLSTVLTLVIVPAVF 1018
               A  R P+G+ ++GGLL+S VLTL   P ++
Sbjct: 979  GSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIY 1011



 Score = 50.8 bits (120), Expect = 5e-10
 Identities = 61/315 (19%), Positives = 138/315 (43%), Gaps = 19/315 (6%)

Query: 186  EIRVILDPARLQAYGVTAAQVNAQLSQVNINAAGGR--TEIAGAEQSIRVLGNARNAHDL 243
            ++ +++D       G++ +Q+   L     +A G R  + I       RV+  + +A  +
Sbjct: 709  QVYLVIDRDMASRLGISVSQITNAL----YDAFGQRQISTIYTQASQYRVVLQSSDAATI 764

Query: 244  G-----QTQIAISGGRTVKLADIADVRDMYAEQRSLALMNGRQVTSFSLEKAKGSSDVTV 298
            G        +  + G  V+L+ +A +    A Q +++ +      + S   A G+S    
Sbjct: 765  GPQALESIHVKATDGGQVRLSALARIEQRQA-QLAISHIGQFPAVTLSFNLAHGAS---- 819

Query: 299  YDDAMKVLDKLKKE--NPKVQFKQLYSSVEYTRGQYHSAMSAMIEGAVLAVVIVFLFLRD 356
              +A++V+++++K+   P     +   + E  +    S +  ++   V   +++ +    
Sbjct: 820  LGEAVQVIEQVQKDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYES 879

Query: 357  WRATMISALAIPLSAIPSFWFMDMLGFTLNGISLLALSLVAGVLVDDAIVEIENIVRHMR 416
            +   +     +P +A+ +   + + G  L  I+++ + L+ G++  +AI+ I+  +   R
Sbjct: 880  YIHPITILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAER 939

Query: 417  -MGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMPGISGQFFIQFGMTVVVSVLMS 475
              G S   A   AA      +L TT+A +   +P+ L  G   +     G+ +V  +L+S
Sbjct: 940  NQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVS 999

Query: 476  LAVARLITPMIAAYF 490
              +    TP+I  YF
Sbjct: 1000 QVLTLFTTPVIYLYF 1014