Pairwise Alignments

Query, 1054 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  348 bits (892), Expect = 2e-99
 Identities = 286/1057 (27%), Positives = 485/1057 (45%), Gaps = 62/1057 (5%)

Query: 5    NISAWAIRNPVPPLVLFAALMLAGVVSFLRMDINQNPDISFPMVSVTVSQPGAAPTELET 64
            N+S   IR PV  ++L  A+ML G VSF  + +   P + FP++ V+ +  GA+P  + +
Sbjct: 2    NLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMAS 61

Query: 65   QVTQRVEAAVRGISGVEDITSFASEGQSLTNVQFKIGTPVDRAVNDVKNAVDQIRSDLPD 124
             V   +E  +  I+GV  +TS +++G +   + F++G  +D A  +V+ A++  R+ LP 
Sbjct: 62   TVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLPS 121

Query: 125  GILE-PQVQRIDVDGGPIAYFSAEATDMTLEELSWYVDNTVAKRLLSVSGMAAVRRGGGV 183
            G+   P  ++I+    PI   S  +  +   +L    D  +++ L  VSG+  V+ GG  
Sbjct: 122  GMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGSS 181

Query: 184  SREIRVILDPARLQAYGVTAAQVNAQLSQVNINAAGGRTEIAGAEQSIRVLGNARNAHDL 243
               +R+ ++P  L  Y ++  +V   +S  N     G  E A     +R      +A D 
Sbjct: 182  LPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKDY 241

Query: 244  GQTQIAISGGRTVKLADIADVRDMYAEQRSLALMNGRQVTSFSLEKAKGSSDVTVYDDAM 303
                I    G  ++L+D+A V D    + +    N +      + +  G++ +   D   
Sbjct: 242  EPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQIK 301

Query: 304  KVLDKLKKENP-KVQFKQLYSSVEYTRGQYHSAMSAMIEGAVLAVVIVFLFLRDWRATMI 362
              L  L+   P  VQ           +     A   ++   VL +++V+LFL   RA++I
Sbjct: 302  AQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASLI 361

Query: 363  SALAIPLSAIPSFWFMDMLGFTLNGISLLALSLVAGVLVDDAIVEIENIVRHMRMGKSAY 422
             +LA+P+S + +F  M + GF+LN +SL+AL L  G++VDDAIV +ENI RH+  G+   
Sbjct: 362  PSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPPM 421

Query: 423  QASIDAADEIGLAVLATTMAIVAVFLPVALMPGISGQFFIQFGMTVVVSVLMSLAVARLI 482
            +A+   A E+G  +L+  +++VAVF+ +  M GI    F +F +T+  ++++SL V+  +
Sbjct: 422  KAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLTL 481

Query: 483  TPMIAAYFLKAHGEASHGEGWLMDRYMSVLHWSLDQRKAKARRARGGFRNRFVAFFVDHR 542
            TPM+ A +LK        E   + R+   LH    QR   A     G+  R     +   
Sbjct: 482  TPMLCARWLK----PQQAEQTRLQRWSDTLH----QRMVAAYDHSLGWALRHKRLTLLSL 533

Query: 543  VWTLGIGMLAFVATLFAFGTLPMTFQPTINTDFSQVKIETVPG---STLEQTTAITRKVA 599
            + T+GI +  +V        +P T  P  +T      I    G   + ++    I R+  
Sbjct: 534  LATIGINIALYV-------VVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRA- 585

Query: 600  DMLAADTDVVEAAFADIEPTSADIFLTLKKTRPMSS--------VDWERKIAPKFQTIAD 651
              L AD  V   A      +  +    L + +P+S         ++  RK  PK      
Sbjct: 586  --LLADPAVQSVAGFIGGNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRL 643

Query: 652  ARVNFQSQSGGGFGRD-----IIMMYGSDDPELLEKTANQLVHEMAGIRELRAPRVQGDM 706
              +  Q    GG GRD      +    S D   L +   ++V  +  + EL A   +   
Sbjct: 644  FLMADQDLQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGA 703

Query: 707  QRPEIIIKPRLDLAASMGV----TTAALSQSI---RIATIGDIDQNVAKFSLSDRQIPIR 759
               ++ +    D A  +G+     TA L+ +    +I+TI D        SL+  Q+ + 
Sbjct: 704  GTQQVTLVVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYD--------SLNQYQVVLE 755

Query: 760  VALAEDSRKDIATIENMPVPTVSGGSVPLKVVADISFGAGPTQIRRYNQIRRVVVGADLA 819
            +        D +T+E + V T  G  VPL  +A         ++    Q     +  D+A
Sbjct: 756  I--NPKYAWDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVA 813

Query: 820  PGIVTSQANQKINELPTMKAIKEGRIQGVQKIEAGDSKFQAEMLTNFVIAVFSGIMLVLA 879
             G    QA   +        + E  I  +     G +   A+        +   ++LV  
Sbjct: 814  EGYSPDQAMAALERAVAKLGLPEEVIAKL----GGTADAFAQTQQGQPFMILGALLLVYL 869

Query: 880  VLVLLYKRIMPPFVNLGSLLLAPLGGAIALHIAGQPMSLPVFIGLLMLLGIVAKNSILVI 939
            VL +LY+  + P   L +L  A +G  +AL++ G   SL   +GL +L+G+V KN+IL+I
Sbjct: 870  VLGILYESYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMI 929

Query: 940  DFALE-EMEKGVPKQEAILDAGHKRAQPIVMTTVAMVAGMVPTALSLSGDAAWRAPMGIT 998
            D AL+ E  +G   +E+I  A   R +PI+MTT+A + G +P  LS +  A  R P+G+T
Sbjct: 930  DLALQLERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLT 989

Query: 999  VIGGLLLSTVLTLVIVPAVF----SLALGVEQWAGPR 1031
            +IGGL+ S +LTL   P V+     L     +W G R
Sbjct: 990  IIGGLVFSQILTLYTTPVVYLYLDRLRHRFNRWRGVR 1026