Pairwise Alignments

Query, 588 a.a., Single-stranded-DNA-specific exonuclease RecJ from Sphingobium sp. HT1-2

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  269 bits (688), Expect = 2e-76
 Identities = 186/508 (36%), Positives = 275/508 (54%), Gaps = 20/508 (3%)

Query: 35  LVAQLLLARGCPPDGVEAHRNPTIRHFMPDPSLFRDMDAAAERLADAVQRGEDVRIFGDY 94
           L+ +L  ARG      EA  + ++   +P   L + ++A  + L +A+ + + + I GD+
Sbjct: 21  LLTRLYAARGVQS---EAELDKSLARLLPYQQL-KGIEAGVDLLVEAIDQRQRILIVGDF 76

Query: 95  DVDGATSAALLIRLLRDIGLDARPY-IPDRLMEGYGPSGEALVRLAGDGAQLIVTVDCGA 153
           D DGAT++ + +  LR +G     Y +P+R   GYG + E +        QL++TVD G 
Sbjct: 77  DADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITVDNGI 136

Query: 154 QAFEALDMAKAAGVDVVVVDHHKCAAALPVALALVNPNRLDENDAAAVHGHLAAVGMAFL 213
            + + +  AKAAG+ V+V DHH     LP A A++NPN   +   +     LA VG+ F 
Sbjct: 137 SSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPN---QPGCSFPSKSLAGVGVIFY 193

Query: 214 LGAALLRTLRARGWFATRPEPAIMELLDIVALGTVADVAQLKGLNRAFVAQGL-KVMAKR 272
           +  AL   LR+ G +  +P+P I ELLD+VALG+VADV  L   NR  V QGL ++ A R
Sbjct: 194 VLMALRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253

Query: 273 RNIGLAALMDASRLNRAPLCH-DLGFALGPRINAGGRVGKADLGVRLLTTEDPAEAARIA 331
              GL A+++ +R +   +   DLGF LGPR+NA GR+    LG+  L  ED A A  +A
Sbjct: 254 ARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDMA 313

Query: 332 AELDRLNEERRAIESIVQEQAEALLAAQDNRAVALVAG-----PGWHPGVIGIVAGRLKE 386
            +LD LN++R++IE  +Q   EAL   +D    ++  G       WH GVIGI+A RLKE
Sbjct: 314 QQLDDLNQDRKSIEQGMQR--EALAQLKDLPVESMPYGLCLFDADWHQGVIGILASRLKE 371

Query: 387 RAGRPAIVVALDEDGVGKGSGRSISGVDLGAAV--LAAKDSGLLVAGGGHAMAAGLTVMA 444
           R  RP I  A   DG+ KGS RS+ G  +  A+  +AA+   L+   GGHAMAAGL++  
Sbjct: 372 RYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPE 431

Query: 445 DKVDALAEFLDDRLSAAVARARDGRALLIDAVLAPAGVNPDFVAAIEAGGPYGAGWPAPL 504
               A AE  D+ +   +        LL D  LA    + D   A+   GP+G  +P PL
Sbjct: 432 ANFSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPL 491

Query: 505 IAAGPMRVIRADVVGNGHLRAIMAGDDG 532
              G  +++   VVG  HL+ ++  + G
Sbjct: 492 F-HGVFQLVEQRVVGERHLKVVLKSECG 518