Pairwise Alignments

Query, 191 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Sphingobium sp. HT1-2

Subject, 186 a.a., RNA polymerase sigma-H factor from Xanthobacter sp. DMC5

 Score = 82.0 bits (201), Expect = 6e-21
 Identities = 67/182 (36%), Positives = 86/182 (47%), Gaps = 19/182 (10%)

Query: 5   EPDDATLAAQALAGRQAAYGALMRRHRDAVYRLARGHVDDADAAMDIVQESFVAAFASLA 64
           EP D  L +   AG +AA+  L +R+       AR  V     A D+ QE+ +  + +  
Sbjct: 3   EPSDEDLMSAIAAGDEAAFRVLCQRYAVRAVAFARRFVGSGTDAEDVAQEALLRVWRAAP 62

Query: 65  RYDGRRPFRGWIARITINKCHDWARRRAVRRFFSFARPIEDAAHVADAAPDPEQEAGSRA 124
           R+     F  W  RI IN C + ARRR    F      ++ A   AD APD      + A
Sbjct: 63  RWRPDAAFGTWFYRIVINLCLN-ARRRL--PFLG----LDAAGERADPAPD------ALA 109

Query: 125 GIARIEA------AVAALPVALREVILLRGIEGMSQAEVAQILGVTEKAVETRLYRARRQ 178
           G+ R E       AVAALP   R  ILL   EG S A  A+ILG +   VET L RARR 
Sbjct: 110 GLERQEEDRALLDAVAALPERQRMAILLTYWEGFSNAHAAEILGTSVSGVETLLVRARRS 169

Query: 179 LQ 180
           L+
Sbjct: 170 LR 171