Pairwise Alignments

Query, 401 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 369 a.a., Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system from Variovorax sp. SCN45

 Score =  105 bits (262), Expect = 2e-27
 Identities = 98/370 (26%), Positives = 165/370 (44%), Gaps = 33/370 (8%)

Query: 23  IGIGAAVVALAVVGVGVASRISATNELRETAADASVPT--VAVVKPTMNGEGNDLVLPGN 80
           +G   A + L   G G+A ++   +     A    +P   VAV           L   G 
Sbjct: 9   LGASLATLVLGGAGFGLAMKLRPAH-----AEGGGMPPAKVAVATAQKTQVARFLSGIGT 63

Query: 81  VQAYNSAAIYARTNGYVRRWLADIGDRVRAGQPLAVL-DAPDLDQQVAAAQADYQTALAN 139
           ++A     + A   G V + L   G  VRAGQ L  L DAP+        Q D +   A 
Sbjct: 64  LEANRQVEVPAEVEGRVAKILFTPGGEVRAGQLLVQLNDAPE--------QGDMERLTAQ 115

Query: 140 QRLAETTSKRWSAMLAQDAVSRQEADEKAGDLAARTAVSNAALANVKRLKAQQGFTRLAA 199
           +  A+   +R   +L Q A ++++ ++         A  + A  +++R +A     R+ A
Sbjct: 116 RANAKALLERTRRLLPQQAATQEQLEQAQ-------AAFDQASGDLRRAQAVLEQKRIKA 168

Query: 200 PFDGVVTSRSAQIGALVVSGNAAAQPLFTVSDIHRMRIYVRVPQGYSASVRPGMGATLTL 259
           PFDGV+  R   +G  V +G+A    L +++D   +   + +P+     ++      L++
Sbjct: 169 PFDGVLGIRRVNLGQFVRAGDA----LVSLTDSRTLFANLTLPETALPVLKRNQQVALSV 224

Query: 260 PEYPGRSFNATLTSSSGAVDAQSGAVLVQLQAENPDGALKPGAFAQVSFKVGAGQGNGMT 319
             YPGR F   L++    + + +  V +Q   +N DGAL PG F      + A + + +T
Sbjct: 225 DAYPGRVFQGRLSTIEPQIGSDTRTVRLQATIDNADGALTPGMFVNGKVALPA-RPDAIT 283

Query: 320 LPGSAILYSNNGPSVAVVGADNR---ITMKPVAIARDE--GATVQIASGLSPNDRIVDTP 374
           +P +AI YS +G SV VV    +    T + V +   E     V I +GL+P D++V + 
Sbjct: 284 VPETAITYSTHGDSVFVVRPAEKGDGFTAQQVFVKAGERQDGLVVIENGLAPGDKVVTSG 343

Query: 375 PDAIRTGDTV 384
              + TG  V
Sbjct: 344 QLRLYTGAAV 353