Pairwise Alignments

Query, 401 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 374 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  108 bits (271), Expect = 2e-28
 Identities = 102/370 (27%), Positives = 164/370 (44%), Gaps = 30/370 (8%)

Query: 33  AVVGVGVASRISATNEL-RETAADASVPTVAVVKPTMNGEGNDLVLP--GNVQAYNSAAI 89
           A+V  GV   ++  N + ++  A    P ++V           +V+P  G +QA N   I
Sbjct: 14  AIVFGGVFGFVAFKNHMIKQFFATMPKPVISVTTAKAQMVDWRVVVPAVGTLQAVNGVDI 73

Query: 90  YARTNGYVRRWLADIGDRVRAGQPLAVLDAPDLDQQVAAAQADYQTALANQRLAETTSKR 149
                G V+    + G  V+ GQ L  LD             D ++A A   LA+T+  R
Sbjct: 74  SGSVAGLVKAISFESGQDVKRGQVLVQLDTD-------VEMGDLRSAQAELGLAKTSHDR 126

Query: 150 WSAMLAQDAVSRQEADEKAGDLAARTAVSNAALANVKRLKAQQGFTRLAAPFDGVVTSRS 209
              ++  D VS    ++   +L  + A        V  L+AQ     +AAPFDG +  R 
Sbjct: 127 NMKLVRSDTVSVAALEKTEAELKVKQA-------KVGGLQAQIAKKTIAAPFDGRLGVRK 179

Query: 210 AQIGALVVSGNAAAQPLFTVSDIHRMRIYVRVPQGYSASVRPGMGATLTLPEYPGRSFNA 269
             +G  V  G    Q +  + D+  M     V Q   + +  G    +T   +PG +F  
Sbjct: 180 IDLGQYVQPG----QMVVNLQDLSLMLCDFTVSQKDLSLLGIGQTVRMTTDAWPGVTFEG 235

Query: 270 TLTSSSGAVDAQSGAVLVQLQAENPDGALKPGAFAQVSFKVGAGQGNGMTLPGSAILYSN 329
            + +    VDA++G V VQ +  N +G L+PG FA++  +  AG    +T+PGSA+ Y+ 
Sbjct: 236 QVAAIEPLVDAKTGMVSVQARFPNAEGRLRPGMFARIEIERPAG-APVVTVPGSAVAYNL 294

Query: 330 NGPSVAVV----GADNRITMKP----VAIARDEGATVQIASGLSPNDRIVDTPPDAIRTG 381
           +G +V VV    GAD +   K     V++   +   V I SG++  D +V +    +  G
Sbjct: 295 HGDAVFVVKEEAGADGKTVSKAERVVVSLGERKDGLVVIKSGVAAGDVVVTSGQVKLEHG 354

Query: 382 DTVKVQASAP 391
             + V AS P
Sbjct: 355 SLIHVAASDP 364