Pairwise Alignments

Query, 1064 a.a., CzcABC family efflux RND transporter, transmembrane protein from Sphingobium sp. HT1-2

Subject, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  354 bits (908), Expect = e-101
 Identities = 281/1044 (26%), Positives = 486/1044 (46%), Gaps = 45/1044 (4%)

Query: 9    LHRPLTFIVMAILIAIVGILSAARTPVDMFPNIRIPVIAVAFQYAGLSPEDMSGRIVGPY 68
            + RP+  +++++ I ++G +S    PV   P +  PVI V+   +G SPE M+  +  P 
Sbjct: 8    IRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMASTVATPL 67

Query: 69   ERVLTTTVNDIEHIESQSLQGIGVIKIYFQPGADIRTATAQVTSISQTVLRQMPPGV-TP 127
            ER L + +  +  + S S QG   + I F+ G DI  A  +V +        +P G+ + 
Sbjct: 68   ERKLGS-IAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLPSGMRSM 126

Query: 128  PLILNYSASTVPILQLALSGKGLSEQQLFDLGQNQIRPQLVTIPGLAMPFPSGGKQRQVQ 187
            P     + S  PI+ L+L+   L + QL+DL    +   L  + G+      G     V+
Sbjct: 127  PTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGSSLPAVR 186

Query: 188  IDLNPLALQSKGLSAQDVGNAIAAQNQINPAGFVKIGATQYSVRLNNAPESIAALNDLPV 247
            I + P  L    LS  +V  A++  NQ  P GFV+     + VR N+  ES      + +
Sbjct: 187  IAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKDYEPVVI 246

Query: 248  KVVNGATIYMRDVAYVRDGAGPQQNIVHVEGSRSALLTVLKNGSTSTLAIVDGVKQALPK 307
            +  NG  + + DVA V DG   + N        + LL V +    + +  VD +K  LP 
Sbjct: 247  RQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQIKAQLPA 306

Query: 308  ISATLPDTLKILPIGDQSLFVKAAVEGVIHEGAIAAALTSLMILLFLGSWRSTVIIALSI 367
            + + LP ++++    D+S  +KA ++   H   IA  L  L++ LFLGS R+++I +L++
Sbjct: 307  LQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASLIPSLAV 366

Query: 368  PLAILAAIAALAMFGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKGVIEAILD 427
            P++++   A + + G +LN ++L  L LA G++VDDA V +ENI+ H+E G+  ++A   
Sbjct: 367  PVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPPMKAAFL 426

Query: 428  GAAQIVTPAFVSLLCICIVFVPMFFLPGVAGFLFVPMALSVVFAMIASFILSRTLVPTMA 487
            GA ++        + +  VFV + F+ G+   LF   ++++  A+I S ++S TL P + 
Sbjct: 427  GAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLC 486

Query: 488  MYLLKPHHVGDEDEHLAGTATSRNPLVSFQRGFEYRFEKVRTSYVGMLHRALGARKPFLI 547
               LKP                       QR  +   +++  +Y   L  AL  ++  L+
Sbjct: 487  ARWLKPQQAEQ---------------TRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLL 531

Query: 548  GFMAVVVLSFGLLPFLGSNFFPSVDSGQIAMHIRVPVGARIEDTAARFDQIGREVRKIIP 607
              +A + ++  L   +     P  D+GQ+   IR   G        +  +I R      P
Sbjct: 532  SLLATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKM-EIYRRALLADP 590

Query: 608  ADQLGSITDNIGLPVSSINTVYNNSGTIGPQDGDMLIALNKGHRPTDEFVSQLRRELPRR 667
            A Q  S+   IG           NSGT        L  +++      + + +LR+ELP +
Sbjct: 591  AVQ--SVAGFIG----------GNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELP-K 637

Query: 668  FPGTTFAFLPADITSQILNFG---APAPIDIQIAGKDAEANRAYAQKLLAKITTIPGLAD 724
             PG    FL AD   Q+   G     +     +   D  A R +  K++A +  +P L  
Sbjct: 638  VPGGRL-FLMADQDLQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTA 696

Query: 725  ARIQQPGRAPQLDVDVDRSRVGQYGLTERDVTTSLASSLAGTSQTAPVFFVNPQNGVQYP 784
               +      Q+ + VDR +  + G+ + D+ T++ ++     Q + ++     +  QY 
Sbjct: 697  IDARDGAGTQQVTLVVDRDQAKRLGI-DMDMVTAVLNNAYSQRQISTIY----DSLNQYQ 751

Query: 785  VVAQAPEYLVGSMSDLSNVPVSGAGASAVQPLGGLATIVRSNTVPVVSHYNIAPVLDI-F 843
            VV +         S L  V V  A  + V PL  +A    S     VSH       DI F
Sbjct: 752  VVLEINPKYAWDPSTLEQVQVITADGARV-PLSTIAHYENSLANDRVSHEGQFASEDIAF 810

Query: 844  ATTQGRDLGAVAGDIDRAIKSLKAEEPKGSTITIRGQYATMNTAFSGLGFGLAGAIILIY 903
               +G         ++RA+  L    P+     + G          G  F + GA++L+Y
Sbjct: 811  DVAEGYSPDQAMAALERAVAKLGL--PEEVIAKLGGTADAFAQTQQGQPFMILGALLLVY 868

Query: 904  LLIVVNFQSWVDPFVIITALPAALAGIIWMLFMTGTTLSVPALTGAIMCMGVATANSILV 963
            L++ + ++S++ P  I++ LP+A  G +  L++TG   S+ +L G  + +GV   N+IL+
Sbjct: 869  LVLGILYESYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILM 928

Query: 964  VSFARERLAELGDATKAAL-EAGMVRFRPVLMTALAMIIGMGPMALGLGEGGEQNAPLGR 1022
            +  A +     G + + ++  A ++R RP+LMT LA I+G  P+ L   EG E   PLG 
Sbjct: 929  IDLALQLERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGL 988

Query: 1023 AVVGGLICATIATLFFVPTVFAFV 1046
             ++GGL+ + I TL+  P V+ ++
Sbjct: 989  TIIGGLVFSQILTLYTTPVVYLYL 1012



 Score = 44.7 bits (104), Expect = 4e-08
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 5/153 (3%)

Query: 348  LMILLFLG----SWRSTVIIALSIPLAILAAIAALAMFGQTLNVMTLGGLALAVGILVDD 403
            L++ L LG    S+   + I  ++P A + A+ AL + G   ++++L GL L +G++  +
Sbjct: 865  LLVYLVLGILYESYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKN 924

Query: 404  ATVTIE-NINWHLEQGKGVIEAILDGAAQIVTPAFVSLLCICIVFVPMFFLPGVAGFLFV 462
            A + I+  +     QG    E+I       + P  ++ L   +  +P+         +  
Sbjct: 925  AILMIDLALQLERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQ 984

Query: 463  PMALSVVFAMIASFILSRTLVPTMAMYLLKPHH 495
            P+ L+++  ++ S IL+    P + +YL +  H
Sbjct: 985  PLGLTIIGGLVFSQILTLYTTPVVYLYLDRLRH 1017