Pairwise Alignments

Query, 1062 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score =  745 bits (1924), Expect = 0.0
 Identities = 416/1043 (39%), Positives = 637/1043 (61%), Gaps = 21/1043 (2%)

Query: 4    SRFFIDRPIFAAVIAVVITVVGALAFVGLPVSQYPDIVPPTVTVSAQYPGASAETVASTV 63
            S+FFIDRPIFA VIA+VI +VGAL+ + LP++QYP I PP + ++  YPGASA+TV  TV
Sbjct: 2    SKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDTV 61

Query: 64   AAPIEQEINGVDDMLYQSSQSTGDGKVVITVTFKIGTDLDAAQVLVQNRVAVAIPRLPEE 123
               IEQ++NG+D++ Y SS+S  DG + IT TF+ GT+ D AQV VQN++ +A P LP+E
Sbjct: 62   VQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQE 121

Query: 124  VQRLGVVTRKTTPEFLMVVNLQSPDGTYDRDYISNYALTQVRDRLARLDGVGDVQLFGSR 183
            VQ+ G+   K    FL+V+ L S DG+  +D ++NY ++ ++D ++R  GVGD Q+FG++
Sbjct: 122  VQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGAQ 181

Query: 184  DYAMRIWIDPDRAAALDLTAGEIVSALRAQNVQVSAGSIGQPPYDRGEAFQLGVEMQGRL 243
             YAMRIW+DP +     LT  ++ +A+ AQNVQVS+G +G  P   G      +  + RL
Sbjct: 182  -YAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240

Query: 244  TTPDQFSDIVIRSDADGHQVRVRDVARVELGAQDYGTNTYLSNKPTVVIATMQRPGSNAL 303
             T +QF  I+++ + DG QVR+ DVA+V LG ++Y  +   + KP   +A     G+NAL
Sbjct: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300

Query: 304  DAAEKVKAEMEQLSKRFPKGLEYSIIYNPTEFISQSIDAVYHTLFEAVILVVIVILIFLQ 363
            D A+ ++  ++ L   FP G++    Y+ T  +++SI  V HTL EAV+LV +V+ +FLQ
Sbjct: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360

Query: 364  NWRAAVIPIIAIPVSLIGTATMLAAVGYSLNNLSLFGLVLAIGIVVDDAIVVVENVERNI 423
            N+RA +I  + +PV L+GT  +LAA G+S+N L++F +VLAIG++VDDAIVVVENVER +
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 424  -ENGMSPLQAARVSMDEVSTALIAIVLVLCAVFVPTLFITGISGAFYQQFAVTISTATVI 482
             E G+ P +A + SM+++  AL+ I LVL AV +P  F  G +G  Y+QF++TI +A  +
Sbjct: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480

Query: 483  SLILSLTLSPAAAALLLKS-KHGAHDLDNAPRWRQVAAKAA--DRFNQGFDRMSAGYARL 539
            S++++L  +PA  A +LK  K G H            AK      FN+ FDR   GY R 
Sbjct: 481  SVLVALIFTPALCATMLKPLKKGEHH----------TAKGGFFGWFNRNFDRSVNGYERS 530

Query: 540  TRFLVARPKKMLLTYAGLIAATIALFWVTPGGFIPAQDQGYFLAVVQLPSGASLERTDKV 599
               ++      LL YA ++   I LF   P  F+P +DQG   A VQ P+G+S ERT  V
Sbjct: 531  VGAILRNKVPFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVV 590

Query: 600  TREVAAKILPIKGLRGAVMFA--GFHGPSQTQAPNSAAIYFPFKSFAERKAEGATYAGIM 657
              ++   +L  +    + +F   GF+   + Q  +S   +   K + ER  E + +A + 
Sbjct: 591  VDQMREYLLKDEADTVSSVFTVNGFNFAGRGQ--SSGMAFIMLKPWDERSKENSVFA-LA 647

Query: 658  DQANKAVAGYDKARILLVPPPLIQGIGSAGGYRLMLEDREDRGYAELNKVAGELIGKANQ 717
             +A +    +  A +    PP +  +G+A G+ + L+DR   G+ +L +   + + KA Q
Sbjct: 648  QRAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQ 707

Query: 718  SPSLAQVYTLFDVGTPRIFADVDRRKADLLGVPPERVFEAMQVYLGSAFVNDFNLLGRTY 777
            S  L+ V        P+    +D  +A  LGV    +   + + LG+++VNDF   GR  
Sbjct: 708  SKILSAVRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVK 767

Query: 778  RVTAQADAEHRGTVADIANLKTRSNSGQMVPIGSVSTFRDKTGPYRVVRYNLLPAVEIDG 837
            +V  Q +   R +  D+     R+ +G+MVP  S +      G  ++ RYN + A+EI G
Sbjct: 768  KVYIQGEPSARMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILG 827

Query: 838  DTAPGYSSGQSLSTMEKLADAAPAGYASEWTGVAYQQISAGNTAGIVFGMAVFFVFLVLA 897
              APGYS+G++++ +E++A   P+G    WTG++Y++  +G+    +F ++V FVFL LA
Sbjct: 828  APAPGYSTGEAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLA 887

Query: 898  AQYESLTLPLSIILIVPMCLFAAMLGVNLRGMDNNILTQIGLVVLIALAAKNAILVVEFA 957
            A YES ++P++++L+VP+ +  A++  +LRG+ N++   +GL+  I LAAKNAIL+VEFA
Sbjct: 888  ALYESWSIPIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFA 947

Query: 958  KQAEEEQGLSPVEAAVQAAQTRLRPILMTSFAFILGAVPLVIASGAGAELRQALGTAVFF 1017
            K+   EQG S  +AA++A + RLRPI+MTS AFILG VPL IASGAGA  + A+GT V  
Sbjct: 948  KEL-HEQGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIG 1006

Query: 1018 GMTGVTAFGLLFTPTFYVVCRAL 1040
            GM   T   + + P F+V   +L
Sbjct: 1007 GMISATVLAIFWVPLFFVAVSSL 1029