Pairwise Alignments

Query, 420 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  188 bits (477), Expect = 3e-52
 Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 32/381 (8%)

Query: 31  IAAVALIALFGIGWKLVDRPSAQAAAAPLAAVGVSAPLARSVTQWDDYVGRFAPSQTVEI 90
           ++AVAL  L   G K  +  +A AA AP   V    P A ++T   +  GR +  +  E+
Sbjct: 11  VSAVALATLLS-GCKKEE--AAPAAQAPQVGVVTIQPQAFTLTS--ELPGRTSAYRVAEV 65

Query: 91  RPRVSGAVTAIHFRDGDFVRQGQLLFTIDQRPFQAALAEARASVASARSALLLAQNDYGR 150
           RP+V+G +    F++G  V++GQ L+ ID   ++A LA A+A++ + RS   LA+    R
Sbjct: 66  RPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRS---LAE----R 118

Query: 151 VQRLTGDEAVSASEVDSLRSRLQAAQAALAGAQARERSRALDVEFTQVRAPISGRVSDRR 210
            ++L  ++AVS  E D   ++   A+A+L  AQ       +D+ +T+V APISGR+    
Sbjct: 119 YKQLIDEQAVSKQEYDDANAKRLQAEASLKSAQ-------IDLRYTKVLAPISGRIGRSS 171

Query: 211 VDIGNLVSGGEGSTASLLTTVNKLDPIYFNFDASEALYLKSQRDKENG---------GAV 261
              G LVS G+      + T+ +LDPIY +   S A  LK +RD E+G          +V
Sbjct: 172 FTEGALVSNGQ---TDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASV 228

Query: 262 EVRLQDEADYNHKGRLDFTDNGLDPRSGTIRIRAVFDNPGNFLTPGLFGNMRLANGGKAN 321
           ++ L+D + +  +GRL+F++  +D  +G++ +RA+F NP + L PG+F + RL  G  AN
Sbjct: 229 QLVLEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNAN 288

Query: 322 ALLVPDEAIQSD-QARKTVLVVDKDDSVAVKPVELGPIVDGLRIIRSGLDPKDRVVVTNL 380
           A+L P + +  D +   T LVV++++ V ++ ++    +    +I  GL+P DR++   L
Sbjct: 289 AILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGL 348

Query: 381 QAAMPGAKVAVKPARITPTPA 401
           Q   PG +V V  A     PA
Sbjct: 349 QYVRPGVEVKVSDATNVKKPA 369