Pairwise Alignments
Query, 916 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2
Subject, 578 a.a., putative ATP-binding component of a transport system (VIMSS) from Escherichia coli BW25113
Score = 311 bits (797), Expect = 7e-89
Identities = 201/576 (34%), Positives = 296/576 (51%), Gaps = 80/576 (13%)
Query: 13 DPVVRLSGVRLHYGKTQ--ALRGIDLDIPGGRMIGLIGPDGVGKSSLLSLVAGAHVIQDG 70
D V+ L+G+ + A+ +D I G + GL+GPDG GK++L+ ++AG G
Sbjct: 3 DAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSG 62
Query: 71 DVYVLGGDMRDKRHRSDVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGHDGAERRRR 130
V+G D ++ + + YMPQ G LY L+V ENL + L G R++
Sbjct: 63 SATVIGFD--PIKNDGALHAVLGYMPQKFG--LYEDLTVMENLNLYADLRSVTGEARKQT 118
Query: 131 IDALTRATGLDPFLARPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFW 190
L T L PF R AGKLSGGMKQKLGL C L+ +P +L+LDEP GVDP++R + W
Sbjct: 119 FARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELW 178
Query: 191 DLINDIR----------------------------------------QTQAQMSVIVATA 210
+++++ QT A S ++ +
Sbjct: 179 QMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSP 238
Query: 211 YMDEA---QRFDWLVAMDDGQILDTG---------TPAEIFARTG---------TSSLEE 249
+ QR L + DG I TP +I G T E+
Sbjct: 239 HEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFED 298
Query: 250 AFIAVL----PEEKKRGHEPVIIPPLEASEDDIAIEAQGLTMRFGDFTAVDHVSFRIRRG 305
AFI +L E G I+ +E + + IEA+ LT +FGDF A DHV+F ++RG
Sbjct: 299 AFIDLLGGAGTSESPLG---AILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRG 355
Query: 306 EIFGFLGSNGCGKSTTMKMLTGLLPATEGKAWLFGNAVDPDDMSTRKRVGYMSQAFSLYT 365
EIFG LG NG GKSTT KM+ GLL T G+A + G + R+ +GYM+Q FSLY
Sbjct: 356 EIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYG 415
Query: 366 ELTVRQNLEFHAHLFHVPREDIPARVAEMADRFDLGPVMEELPDSLPLGIRQRLSLAVAM 425
LTV QNL F + ++ + +++ M++ F L + D LPLG +QRL+LA ++
Sbjct: 416 NLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSL 475
Query: 426 VHKPELLILDEPTSGVDPVARDGFWRLLAELSRRDKVTIFISTHFMNEAMRCDRMSMMHA 485
+H+P++L LDEPTSGVDP+ R FW + + + VT+ ++THFM+EA CDR+ +++
Sbjct: 476 MHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKG-VTVMVTTHFMDEAEYCDRIGLVYR 534
Query: 486 GHVLDSDAPARL-----IEKRGAPDLEQAFIGYLVD 516
G ++ S P L +++ P +EQAFI + D
Sbjct: 535 GKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHD 570
Score = 147 bits (370), Expect = 2e-39
Identities = 83/258 (32%), Positives = 147/258 (56%), Gaps = 12/258 (4%)
Query: 13 DPVVRLSGVRLHYGKTQALRGIDLDIPGGRMIGLIGPDGVGKSSLLSLVAGAHVIQDGDV 72
+ V+ + +G A ++ + G + GL+GP+G GKS+ ++ G V G
Sbjct: 327 ETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQA 386
Query: 73 YVLGGDMRDKRHRSDVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGHDGAERRRRID 132
VLG D+++ ++ + YM Q +LY L+VE+NL+FF ++G G + +I
Sbjct: 387 LVLGMDLKESSGKAR--QHLGYMAQKF--SLYGNLTVEQNLRFFSGVYGLRGRAQNEKIS 442
Query: 133 ALTRATGLDPFLARPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDL 192
++ A GL + +L G KQ+L L C+L+H+PD+L LDEPT+GVDPL R +FW
Sbjct: 443 RMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLH 502
Query: 193 INDIRQTQAQMSVIVATAYMDEAQRFDWLVAMDDGQILDTGTPAEIFARTGTS-----SL 247
IN + + ++V+V T +MDEA+ D + + G+++ +GTP ++ A++ ++
Sbjct: 503 INSM--VEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTM 560
Query: 248 EEAFIAVLPE-EKKRGHE 264
E+AFI ++ + +K+ +E
Sbjct: 561 EQAFIQLIHDWDKEHSNE 578
Score = 129 bits (324), Expect = 5e-34
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 3/226 (1%)
Query: 276 DDIAIEAQGLTMRFG--DFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPATE 333
+D I GL RF D AV + I G + G +G +G GK+T M+ML GLL
Sbjct: 2 NDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDS 61
Query: 334 GKAWLFGNAVDPDDMSTRKRVGYMSQAFSLYTELTVRQNLEFHAHLFHVPREDIPARVAE 393
G A + G +D + +GYM Q F LY +LTV +NL +A L V E A
Sbjct: 62 GSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFAR 121
Query: 394 MADRFDLGPVMEELPDSLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPVARDGFWRLL 453
+ + LGP L L G++Q+L LA +V +P++L+LDEP GVDP++R W+++
Sbjct: 122 LLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMV 181
Query: 454 AELSRRDKVTIFISTHFMNEAMRCDRMSMMHAGHVLDSDAPARLIE 499
EL+ + + I ST +++EA +C + +M+ G +L P L +
Sbjct: 182 HELA-GEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQ 226