Pairwise Alignments

Query, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 376 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  142 bits (358), Expect = 1e-38
 Identities = 108/358 (30%), Positives = 175/358 (48%), Gaps = 25/358 (6%)

Query: 7   VILVALCLAGCGG-----EKEKKARP-PALVEAVAIAPTR-FTDNVEAVGTALANEQVIL 59
           V+L+ L LAG        + +  ++P PA+  AVA A  + +   V +VGT  A + V L
Sbjct: 13  VLLIVLLLAGYKAFSIYQQIQVFSKPKPAVSVAVATATEQPWQLRVSSVGTLKALQGVNL 72

Query: 60  SAPVTERIDVLNFTDGGFVSKGQVIARMAVGQEKAELAAAEATALQADQQLKRIQALKSR 119
           S  +   +  + F  G  V  GQ + ++    E A L  A+A    A     R   L   
Sbjct: 73  SLEIAGTVKDVQFESGQKVKTGQPLVQLDSAVESALLETAQADLGLAQLDYGRGSQLVGS 132

Query: 120 GFATGATVEQQIALANSARANADLARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIA 179
              +    ++  A     +A  +  +A +  + I APF G + +R V  G  + +GT IA
Sbjct: 133 QAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLASGTVIA 192

Query: 180 TVSDISRIKLDFTVPETRLSMIREGMPIKALSAAWPDRPFNGTIATIDPVIDPATRAVRV 239
           T+ D+S + +DF +PE  +  +  G P++   +A+P   F G+I+ I+P ++ +TR V V
Sbjct: 193 TLQDLSSLYVDFYIPEHAVPKVAPGQPVQVEVSAYPGEQFPGSISAINPKVENSTRNVLV 252

Query: 240 RAIMPNPDKALKPGMLLTVSV-FSRERQSLGVPELAVIGDGDERFVFVL----------- 287
           RA + NP+  L PGM   + V        + VPE A+        V+ +           
Sbjct: 253 RATLANPEGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVE 312

Query: 288 ---DGR---TAKRTKVETGIRQNGLVEILGGVKAGQQIVTEGVVKLTDGAPVRLAGDK 339
              DG+    A+R  VETG R+ GLV +  G+KAG+Q+V+ G +KL +G P+ ++ DK
Sbjct: 313 KDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDNGTPIAISPDK 370