Pairwise Alignments

Query, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  135 bits (339), Expect = 2e-36
 Identities = 101/348 (29%), Positives = 160/348 (45%), Gaps = 8/348 (2%)

Query: 8   ILVALCLAGCGGEKEKKARPPALVEAVAIAP-TRFTDNVEAVGTALANEQVILSAPVTER 66
           +  A  L G G      A  PA   A+A A   +      A G   A  QV ++A +  R
Sbjct: 17  LAAAYALVGSGSAPPAAAVWPATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGR 76

Query: 67  IDVLNFTDGGFVSKGQVIARMAVGQEKAELAAAEATALQADQQLKRIQALKSRGFATGAT 126
           I  + F  G  V+ GQ++ ++    E+A     +A    AD  L+R + L++    +   
Sbjct: 77  ITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQEL 136

Query: 127 VEQQIALANSARANADLARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIATVSDISR 186
           ++      + AR       A I  + IRAPF+G + +R V  G  + AG  I +++DIS+
Sbjct: 137 LDNAATAVDVARGELQHVEALIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQ 196

Query: 187 IKLDFTVPETRLSMIREGMPIKALSAAWPDRPFNGTIATIDPVIDPATRAVRVRAIMPNP 246
           + ++F + E     +  G  +     A   + F   +  +DPV+  A R V+V+A +PNP
Sbjct: 197 LHVNFALGEQAAPEVHAGQVLALTVDAVRGQDFQARVVAVDPVVSTA-RLVQVQAALPNP 255

Query: 247 DKALKPGMLLTVSVFSRERQS-LGVPELAVIGDGDERFVFVL-----DGRTAKRTKVETG 300
              L+PGM   V + + +  + L VPE A+      + VFV       G    R +V TG
Sbjct: 256 QGQLQPGMYAGVRLDAAQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTG 315

Query: 301 IRQNGLVEILGGVKAGQQIVTEGVVKLTDGAPVRLAGDKRGDDDKGGK 348
            R  G VEI  G+  G ++V  G +KL+DG PV           +GG+
Sbjct: 316 ERWQGRVEITSGLTPGDRVVVSGQLKLSDGMPVEPVAQDSLQASQGGR 363