Pairwise Alignments

Query, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

Subject, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

 Score =  141 bits (356), Expect = 3e-38
 Identities = 105/347 (30%), Positives = 166/347 (47%), Gaps = 18/347 (5%)

Query: 26  RPPALVEAVAIAPTRFTDNVEAVGTALANEQVILSAPVTERIDVLNFTDGGFVSKGQVIA 85
           +PP  V A       + + + AVG+  A + V LS  V   +  L+F  G  V  GQ++ 
Sbjct: 60  KPPITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLL 119

Query: 86  RMAVGQEKAELAAAEATALQADQQLKRIQALKSRGFATGATVEQQIALANSARANADLAR 145
           ++   QE A L  A A    A     R   L      +    ++  +     +A  +  +
Sbjct: 120 QLNDDQETALLGTALADLGLAKVDFGRGSQLVGDSAISRGEFDRLSSQYRRNQAVVEQLK 179

Query: 146 AGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIATVSDISRIKLDFTVPETRLSMIREGM 205
           A    + I APFSG + +R V  G  + AGT IAT+ D S + +DF VPE  L  +  G 
Sbjct: 180 AQKIKKRINAPFSGTIGIRQVDIGQYLAAGTVIATLQDTSSLYVDFNVPEQALPHLSLGQ 239

Query: 206 PIKALSAAWPDRPFNGTIATIDPVIDPATRAVRVRAIMPNPDKALKPGMLLTVSVFSRER 265
            +    AA+P + F G+++ I+P ++  TR + VRA M NPD  L PGM  ++ +     
Sbjct: 240 QVLVQVAAYPGQRFPGSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLILLPNP 299

Query: 266 Q-SLGVPELAVI--------------GDGDERFVFVLDGR---TAKRTKVETGIRQNGLV 307
           Q  + VPE A+                D D + V+   G+    A++  V+TG R++G+V
Sbjct: 300 QPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERRDGVV 359

Query: 308 EILGGVKAGQQIVTEGVVKLTDGAPVRLAGDKRGDDDKGGKTAKAAG 354
            +  G++AG+Q+VT G +KLT GA +R+  D     + G     + G
Sbjct: 360 VVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKPEPGAAAKDSGG 406