Pairwise Alignments

Query, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1044 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score =  567 bits (1462), Expect = e-165
 Identities = 345/1029 (33%), Positives = 557/1029 (54%), Gaps = 31/1029 (3%)

Query: 8    VRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVETRITQQI 67
            + RP+F+ V+A+++ + G +    L + +YPD  PP V +  TYTGA+A  VE  +TQ I
Sbjct: 6    IDRPIFAWVIAIVIMLGGSLSISQLPLEQYPDIAPPTVKISATYTGASAKTVEDSVTQVI 65

Query: 68   EDAVAGVQGIQTITSTSQD-GTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLPEDALAP 126
            E  + G+  +  +++TS   G+++I++ F    D D A   V++++      LP+   + 
Sbjct: 66   EQQMKGLDNLTYMSATSSSAGSASISLTFTAGTDPDVAQMQVQNKLQQAESRLPQSVQSE 125

Query: 127  --EIRKVDSDARSILFLAFSRPGWSPIQISDYLDRNIADRFAAIDGVARVTIGGEARPST 184
               + K  SD   I+ LA   P  +  QI DY+   + D  + IDGV  V   G    + 
Sbjct: 126  GLTVTKGGSDFLMIVALASDDPSVTGTQIGDYISTTLLDSISRIDGVGDVQTLGSGY-AM 184

Query: 185  RIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRF------ESKDQNQTLRVERPFATPD 238
            RIW +   L  + L P+D+ +AL  QN E+ AG+       + +  N T+       T D
Sbjct: 185  RIWLDPALLEKYALMPSDISSALEAQNTEVSAGQLGALPAIKGQQLNATISARSKLQTVD 244

Query: 239  QFAQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANTLEVAQ 298
            +F ++VV    DG  V LGDVA +E G+E+   S   N   A  +G+   +GAN L V +
Sbjct: 245  EFRKVVVKSNSDGAVVLLGDVATLELGSESYDISTALNGKPAAAMGVQLAAGANALNVGK 304

Query: 299  KAKALIKELEPTLPKGMKV--AIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFLGSV 356
              KA +KE+EP  P  M++   I  D + F+  +I+ V   L EA +LV+L++FLFL S+
Sbjct: 305  AVKAKLKEMEPFYPTEMQLKNVIAYDTTPFVSLSIEEVVKALGEAIVLVVLIMFLFLQSL 364

Query: 357  RATIVPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHRVEQ 416
            RAT++PA+TVP+ LL T  V+ L G SIN LT+ A VLAIGL+VDDAIVV+ENV   + +
Sbjct: 365  RATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERLMGE 424

Query: 417  GDDPLVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIGFSGF 476
            G  P+ A     R++  A++  TLV+ AVF+P+ F  G TG+++R+ ++ +++A+  S  
Sbjct: 425  GLSPVAATRQSMREISGALVGITLVLSAVFIPMAFFGGSTGIIYRQFSVTIVSAMVLSVL 484

Query: 477  ISLSLAPMLCSKLLK-------NAERGRLARWVDDRFQRIEHGYGRWLDWTLKKPLMPLL 529
            ++++L P LC+ LLK        A+ G    W +  F+R   GY RW+   L++    LL
Sbjct: 485  VAMTLTPALCATLLKARNGKGHGAQHGFFG-WFNRTFERASAGYERWVGVVLRRWGRSLL 543

Query: 530  GVAIFLGVAFFLFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLAFLRK 589
               + L V    +  L     P ED G++ A +  P G    R  A +++ E+   ++ +
Sbjct: 544  LYGLVLVVMAVGYVSLATSFLPDEDQGILLAQIQLPVGATDSRTQAVIKQFED---YILQ 600

Query: 590  DGTLQNLVIRTPGGFGTTDDYNNGNVIAFLRPWEDR------TITTAEVATIINKVIADQ 643
               ++ ++  +  G G     N       L+ W +R          A+ AT+    I D 
Sbjct: 601  QPEVEAMISISGLGMGGNSQ-NTARAFIRLKDWSERGGSGQGAAAIAQRATLALSSIGDA 659

Query: 644  PGVRGNAAPRSGLGRGRGLPVNIV-LAGSTYEGLVAARDRIMLAAASYPGLINLDSDYKE 702
                       GLG+  G  + +  L G  ++ LVAAR++ +  A     L+ + S+  +
Sbjct: 660  DAFVMQPPTVRGLGQSSGFDLQLKDLGGLGHDALVAAREQFLELARKDARLLGVRSNGLD 719

Query: 703  TKPQMRIETDLQRAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERDGRQT 762
              PQ+++  D ++AG L +S +D++  L + LG   V  ++++G   +V VQ +   R  
Sbjct: 720  DAPQLKVSIDDRKAGALSLSTSDINSTLATALGGTYVNDFLNQGRVKKVYVQGQASSRMQ 779

Query: 763  LADLERIQVRSRRGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLGQGLA 822
             ADL+   VR+    +VP S+  +     G   L RYN   ++ +    APG S G  +A
Sbjct: 780  AADLDHWFVRNSNNEMVPFSSFASSTWGYGSPLLERYNGNASLEIVGDPAPGVSSGDAMA 839

Query: 823  FLEDQARQSPEVLAIGYRGESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIHPGVII 882
             +E   RQ P+ +   + G+S  LR +G    +++G+++L V+L LAA +ES+  P  +I
Sbjct: 840  AVEAIVRQLPQGIGYEWTGQSYQLRLSGSQAPLLYGISVLFVFLCLAALYESWSVPFSVI 899

Query: 883  ATVPLAVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQLRDEGMEIAEA 942
              VPL V G  L   + G S ++Y Q+G++  VGLAAKN ILIVEFA  L+++G  + +A
Sbjct: 900  LVVPLGVIGAVLATRVAGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQEQGSSVIDA 959

Query: 943  IREAAKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLITLFLIP 1002
               A ++RLRPILMTS+A + G +PL L  GAG+A R +IG  ++ G+  AT++ +F +P
Sbjct: 960  TLVAVRQRLRPILMTSLAFMFGVLPLALSTGAGSAGRQAIGTGVLGGMFSATVLGIFFVP 1019

Query: 1003 IFYSRVAKR 1011
            +F+  +  R
Sbjct: 1020 LFFVLIRGR 1028