Pairwise Alignments

Query, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score =  540 bits (1390), Expect = e-157
 Identities = 331/1031 (32%), Positives = 552/1031 (53%), Gaps = 28/1031 (2%)

Query: 3    LSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVETR 62
            +S   + RP+F+ V+A+++ +VG +    L + +YP   PP +++  TY GA+A  V+  
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 63   ITQQIEDAVAGVQGIQTITSTSQ-DGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLPE 121
            + Q IE  + G+  ++ ++S S  DG+  I   F+   + D+A   V++++   T  LP+
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 122  DALAPEIRKVDSDARSILFLAFSRPGWSPIQ--ISDYLDRNIADRFAAIDGVARVTIGGE 179
            +     IR   +    +L +       S  +  +++Y+  N+ D  +   GV    + G 
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFG- 179

Query: 180  ARPSTRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRF------ESKDQNQTLRVERP 233
            A+ + RIW +  KL  F LTP DV+ A+  QNV++ +G+            N T+  +  
Sbjct: 180  AQYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTR 239

Query: 234  FATPDQFAQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANT 293
              T +QF  +++   +DG QV+LGDVA++  G EN   S + N   A G+ +   +GAN 
Sbjct: 240  LQTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANA 299

Query: 294  LEVAQKAKALIKELEPTLPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFL 353
            L+ A+  +  IK LEP  P G+K     D +  +  +I  V  TLIEA +LV LV++LFL
Sbjct: 300  LDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFL 359

Query: 354  GSVRATIVPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHR 413
             + RATI+  +TVP+ LL T  ++   G SIN LT+ A VLAIGL+VDDAIVV+ENV   
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 414  V-EQGDDPLVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIG 472
            + E+G  P  A      Q+  A++   LV+ AV +P+ F  G TG+++R+ +I +++A+G
Sbjct: 420  MSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMG 479

Query: 473  FSGFISLSLAPMLCSKLLKNAERGR-------LARWVDDRFQRIEHGYGRWLDWTLKKPL 525
             S  ++L   P LC+ +LK  ++G           W +  F R  +GY R +   L+  +
Sbjct: 480  LSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKV 539

Query: 526  MPLLGVAIFLGVAFFLFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLA 585
              LL  A+ +    +LF R+P    P ED GV+ A V  P G+  +R    + ++     
Sbjct: 540  PFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMRE--- 596

Query: 586  FLRKDGTLQNLVIRTPGGFGTTD-DYNNGNVIAFLRPWEDRTITTAEVATIINK---VIA 641
            +L KD       + T  GF       ++G     L+PW++R+   +  A           
Sbjct: 597  YLLKDEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSKENSVFALAQRAQQHFFT 656

Query: 642  DQPGVRGNAAPRSGLGRGRGLPVNIVL---AGSTYEGLVAARDRIMLAAASYPGLINLDS 698
             +  +    AP + L  G     ++ L    G  +E L+ AR++ +  AA    L  +  
Sbjct: 657  FRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVRP 716

Query: 699  DYKETKPQMRIETDLQRAGDLGVSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERD 758
            +    +PQ ++  D +RA  LGV++ D++  L   LG+  V  ++DRG   +V +Q E  
Sbjct: 717  NGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPS 776

Query: 759  GRQTLADLERIQVRSRRGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLG 818
             R +  DL++  VR+  G +VP S+        G  +L+RYN + A+ +  A APG S G
Sbjct: 777  ARMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTG 836

Query: 819  QGLAFLEDQARQSPEVLAIGYRGESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIHP 878
            + +A +E  A + P  +   + G S   + +G  +  +F L++L V+L LAA +ES+  P
Sbjct: 837  EAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIP 896

Query: 879  GVIIATVPLAVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEFANQLRDEGME 938
              ++  VPL + G  +  ++ G S ++Y  +G++  +GLAAKN ILIVEFA +L ++G  
Sbjct: 897  IAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRS 956

Query: 939  IAEAIREAAKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLITL 998
            + +A  EA + RLRPI+MTS+A ++G VPL +  GAGA ++H+IG  ++ G+  AT++ +
Sbjct: 957  LYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAI 1016

Query: 999  FLIPIFYSRVA 1009
            F +P+F+  V+
Sbjct: 1017 FWVPLFFVAVS 1027