Pairwise Alignments

Query, 264 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24-like from Sphingobium sp. HT1-2

Subject, 261 a.a., Phyllosphere-induced regulator PhyR from Xanthobacter sp. DMC5

 Score =  241 bits (616), Expect = 9e-69
 Identities = 136/252 (53%), Positives = 167/252 (66%), Gaps = 8/252 (3%)

Query: 11  LPFLRRYARALTGSQTHGDAYVRATLEAIVAAPEEFPSGVDPRLGLYKTFHAIWSSSHLD 70
           LPFLRRY RAL GSQ  GD  V+ TL+AI+         V PR+ LYK FH  W+     
Sbjct: 10  LPFLRRYTRALMGSQAAGDLLVQNTLQAILDGKVAVDPAVSPRVALYKAFHETWNRQPT- 68

Query: 71  DEPGFSGSIGQEAIAHARLARLTPLPRQALLLTALEGFTTEDAGYLIGLDTADVEALVEE 130
                 G +   A   ARL  + P  R ALLLTA+EGF+  +A  ++G   +DVEA V  
Sbjct: 69  -----GGQVPSRA--DARLQAMDPGSRVALLLTAMEGFSFAEASTILGTTLSDVEAQVVA 121

Query: 131 ALEEIEAQTRAKVLIIEDEPIIAMDIETIVRDLGHDVTAIAVTREDAVREALAERPGLVL 190
           A  EI+ Q   +VLIIEDE +IA+D++T+V +LGH+V  +A T   AV  A     GLVL
Sbjct: 122 AQREIDRQLATRVLIIEDEWVIALDLKTLVTELGHEVIGVAPTHSKAVELAQGGNFGLVL 181

Query: 191 ADIQLADDSSGIDAVKDILAEFSVPVIFITAFPERLLTGERPEPTFLITKPFQRSTVKAA 250
           ADIQLAD SSGI+AV +IL+ F+VPVIFITAFP+RLLTGERPEPT+LITKPF   TVKA 
Sbjct: 182 ADIQLADGSSGIEAVTEILSSFNVPVIFITAFPDRLLTGERPEPTYLITKPFLTETVKAT 241

Query: 251 ISQALFFDEATA 262
           ++QALFF EA A
Sbjct: 242 VAQALFFHEARA 253