Pairwise Alignments

Query, 411 a.a., NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Sphingobium sp. HT1-2

Subject, 596 a.a., NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) from Escherichia coli BW25113

 Score =  303 bits (775), Expect = 1e-86
 Identities = 158/387 (40%), Positives = 234/387 (60%), Gaps = 8/387 (2%)

Query: 29  INFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYMQALPYFDRLDY 88
           +N GP HP+AHG  R+V++LDGE +  C P +G  HRG EK+ E +++   +PY DR++Y
Sbjct: 214 LNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEY 273

Query: 89  CSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPNL 148
                 E  YVLAVEKL  + VP R   +RV  +EL RI +H+L + + + DVGAMTP  
Sbjct: 274 LGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVF 333

Query: 149 WLFEIREDCLNFFERASGARMHSAYFRPGGVHQDVPL---KLLTDIADWLDTRLPRLFED 205
           + F  R+   +  E  +G RMH A+FR GGV  D+P    +LL +  DW+  RL   +E 
Sbjct: 334 FAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLAS-YEK 392

Query: 206 AMSLVVDNRIFKQRNVDISIVSKEDALKWGFSGPMLRGSGIAWDIRKAQPYDVYDRMEFD 265
           A    + N I K R+  ++    ++AL+WG +G  LR +GI +D+RKA+PY  Y+  +F+
Sbjct: 393 A---ALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFE 449

Query: 266 VPVGTAF-DCYDRFMVRVEEVRQSARIMKQCLSEMPEGPIASFDRKVSPPKRGEMKKSME 324
           +PVG    DCY R M++VEE+RQS RI++QCL+ MPEGP  +     +PP +    + +E
Sbjct: 450 IPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIE 509

Query: 325 ALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTAFSHLQAMD 384
            LI HF   + G  +PA E +   E+ KG    YL SDGS   YR ++R  +F+HLQ + 
Sbjct: 510 TLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIP 569

Query: 385 FMMKGHMLADTTAVLGAMDIVFGECDR 411
             ++G +++D    LG++D V  + DR
Sbjct: 570 AAIRGSLVSDLIVYLGSIDFVMSDVDR 596