Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  207 bits (526), Expect = 8e-58
 Identities = 101/265 (38%), Positives = 172/265 (64%), Gaps = 3/265 (1%)

Query: 401 RAVERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKY 460
           RA++  +  ++EI  +  ++  E      + QKG+   R   K M+E+NLRLV+ IA++Y
Sbjct: 58  RALDATQLYLNEIGFSPLLTPEEEVHFARLSQKGDPAGR---KRMIESNLRLVVKIARRY 114

Query: 461 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 520
            NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+
Sbjct: 115 VNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 174

Query: 521 HMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDE 580
           H+++ +N  +R +R+   +   EP+PEE+A  L  P+ +V++++ + +   S++  +G +
Sbjct: 175 HVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPD 234

Query: 581 EDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLE 640
            D  L D + D     P +     +L +++ + L+ LT ++  V+  RFG+  +   TLE
Sbjct: 235 SDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLE 294

Query: 641 EVGQQFSVTRERIRQIEAKALRKLK 665
           +VG +  +TRER+RQI+ + L++L+
Sbjct: 295 DVGLEIGLTRERVRQIQVEGLKRLR 319



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 16/77 (20%)

Query: 99  DDDSSDDDGPKLV---TEKKKETV---------DRTDDPVRMYLREMGAVELLSREGEIA 146
           D +S  ++GP +    T+ K  T           R  D  ++YL E+G   LL+ E E+ 
Sbjct: 24  DTESMSNEGPAVPSVRTKSKNSTALKQHKYIDYTRALDATQLYLNEIGFSPLLTPEEEVH 83

Query: 147 IAKRIE----AGRDTMI 159
            A+  +    AGR  MI
Sbjct: 84  FARLSQKGDPAGRKRMI 100