Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 776 a.a., RNA polymerase sigma factor RpoD from Variovorax sp. SCN45

 Score =  506 bits (1302), Expect = e-147
 Identities = 293/660 (44%), Positives = 401/660 (60%), Gaps = 61/660 (9%)

Query: 30  VKKLIARAKKRGYITYDELNDALPQDQMSSEQIEDIMSALNEMGVNIVENEEASEDGDEQ 89
           +K LI   K RGY+T+ E++D LP   + +E +E +++ LN+MGV + E    + D +  
Sbjct: 165 LKTLITLGKTRGYLTHGEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQ---TPDAETL 221

Query: 90  REREEADDADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAK 149
                A  A      ++  +           RT DPVRMY+REMG VELL+REGEI IAK
Sbjct: 222 LLNNTAPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 281

Query: 150 RIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILDLDAMLSKDPAPENMEEGA 209
           RIE G   M+  +  SP T  AI+E +  +  G++ +  I+D                  
Sbjct: 282 RIEGGLMAMMEAISASPATIAAILEMAATIREGKVVISTIVD------------------ 323

Query: 210 EDDDGEISEKTAGPSFKEEEEPEEESADGDEDEDGAPRARREEDEEEDNTLSLAQMEETL 269
                      + P+  ++   EE+  + DE++D         D+ +  + +L +  E L
Sbjct: 324 ---------GFSNPNEADDYVAEEDFDEFDEEDD---------DDGKGGSKALTKKLEEL 365

Query: 270 KPMALEKFATITEIFRAFSKAQESRMVAMANGESLSQKAEDSYHELREQLTAEVESVQFH 329
           K  ALE+F  I  +F    K  +                  +Y + +E ++ E+ +++F 
Sbjct: 366 KRDALERFDRIASLFEKVHKIYDKEGYGTP-----------AYVKAQEAMSEELMTIRFT 414

Query: 330 QQKIEYLVDQLYAYNRRLTALGGQMLRL-AERHKVSRKDFLERYMGHE----------LD 378
            + IE L D +      +     ++ R+  ++    +++F+  + G +          L+
Sbjct: 415 AKTIEKLCDLVRTQVDDVRKKERELRRIIVDKCGFPQEEFIRDFSGFDKNGNVVASNLLN 474

Query: 379 DAWLEKVQGLDKKWAAFAAAEGRAVERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREA 438
             W+EK     K W+A  A     V+ ++  +++I     + L++ + I   + +GE  +
Sbjct: 475 LKWVEKQAAAGKPWSAVLARNIPPVQELQQRLTDIQSRVVVPLTQLKDINKRMNEGESSS 534

Query: 439 RIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 498
           R AKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
Sbjct: 535 RDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 594

Query: 499 WWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLE 558
           WWIRQAITRSIADQARTIRIPVHMIETINK+ R SRQ L E G EP    +A ++ +P +
Sbjct: 595 WWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKMEIPED 654

Query: 559 KVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLT 618
           K+RK+MKIAKEPIS+ETPIGD++DSHLGDFIED +   P++AA+QA L++ V  +L SLT
Sbjct: 655 KIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDILDSLT 714

Query: 619 PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD 678
           PRE +VLRMRFGI M+TDHTLEEVG+QF VTRERIRQIEAKALRKLKHPSRS K+RSF+D
Sbjct: 715 PREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFID 774