Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  207 bits (528), Expect = 5e-58
 Identities = 102/265 (38%), Positives = 171/265 (64%), Gaps = 3/265 (1%)

Query: 401 RAVERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKY 460
           RA++  +  ++EI  +  +S  E      + QKG+   R   K M+E+NLRLV+ IA++Y
Sbjct: 59  RALDATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGR---KRMIESNLRLVVKIARRY 115

Query: 461 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 520
            NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+
Sbjct: 116 VNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 175

Query: 521 HMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDE 580
           H+++ +N  +R +R+   +   EP+PEE+A  L  P+ +V++++ + +   S++  +G +
Sbjct: 176 HVVKELNVYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGPD 235

Query: 581 EDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLE 640
            D  L D + D     P +     +L +++ + L  LT ++  V+  RFG+  +   TLE
Sbjct: 236 SDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLGELTDKQREVVVRRFGLRGHESSTLE 295

Query: 641 EVGQQFSVTRERIRQIEAKALRKLK 665
           +VG +  +TRER+RQI+ + L++L+
Sbjct: 296 DVGLEIGLTRERVRQIQVEGLKRLR 320



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 121 RTDDPVRMYLREMGAVELLSREGEIAIAKRIE----AGRDTMI 159
           R  D  ++YL E+G   LLS E E+  A+  +    AGR  MI
Sbjct: 59  RALDATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMI 101