Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  533 bits (1374), Expect = e-156
 Identities = 312/655 (47%), Positives = 413/655 (63%), Gaps = 48/655 (7%)

Query: 27  EASVKKLIARAKKRGYITYDELNDALPQDQMSSEQIEDIMSALNEMGVNIVENEEASEDG 86
           ++ +K+LI R +++GY+TY E+ND LP+D    EQ+EDI+  +N+MG+N+ E+   + D 
Sbjct: 8   QSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES---APDA 64

Query: 87  DEQREREEADDADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLREMGAVELLSREGEIA 146
           D     E   D D+ ++++    L   +    + RT DPVRMY+REMG VELL+REGEI 
Sbjct: 65  DALLLAEA--DTDEAAAEEAAAALAAVETD--IGRTTDPVRMYMREMGTVELLTREGEIE 120

Query: 147 IAKRIEAGRDTMILGLCESPTTFNAII-EWSTALNNGEMQLREILDLDAMLSKDPAPENM 205
           IAKRIE G   ++  +   P T + I+ E+      G         L  +LS    P++ 
Sbjct: 121 IAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTTEGGR-------LSDVLSGYIDPDD- 172

Query: 206 EEGAEDDDGEISEKTAGPSFKEEEEPEEESADGDEDEDGAPRARREEDEEEDNTLSLAQM 265
              A  ++  I    A  + +E ++ EEES  GD++E        E +   D  +     
Sbjct: 173 NIAAPTEEVPIPGAKAAAAKEESDDDEEESESGDDEE--------EAESGPDPVV----- 219

Query: 266 EETLKPMALEKFATITEIFRAFSKAQESRMVAMANGESLSQKAEDSYHELREQLTAEVES 325
                  A ++F  +++  +A SK      V   NG +  +  E       + L      
Sbjct: 220 -------AAQRFGAVSDQLQATSK------VLKKNGRNHKESIE-----ALQALADLFMP 261

Query: 326 VQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLAERH-KVSRKDFLERYMGHELDDAWLEK 384
           ++   ++ E LV+++     RL      +++L  R  ++ R DFL  +  +E D  W   
Sbjct: 262 IKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARMPRADFLRMFPSNETDQTWSGD 321

Query: 385 VQGLDKKWAAFAAAEGRAVERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREARIAKKE 444
           +   + KWAA    +  A+   + ++ ++   TG++++E + I   +  GE +AR AKKE
Sbjct: 322 LAKRNTKWAAALGEKNAAIVACQQKLIDLETETGLTVAEIKEINRRMSIGEAKARRAKKE 381

Query: 445 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 504
           MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA
Sbjct: 382 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 441

Query: 505 ITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVM 564
           ITRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+ ER+ MP +K+RKV+
Sbjct: 442 ITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVL 501

Query: 565 KIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERV 624
           KIAKEPIS+ETPIGD+EDSHLGDFIED     P+D A   +LKE    VL+ LT RE +V
Sbjct: 502 KIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKV 561

Query: 625 LRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 679
           LRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  +RSFLD+
Sbjct: 562 LRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE 616