Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 613 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

 Score =  543 bits (1398), Expect = e-158
 Identities = 314/656 (47%), Positives = 418/656 (63%), Gaps = 53/656 (8%)

Query: 27  EASVKKLIARAKKRGYITYDELNDALPQDQMSSEQIEDIMSALNEMGVNIVENEEASEDG 86
           ++ +K L+ R K++GY+TY E+ND LP+D + S+QIEDI+  +N+MG+ ++E    + D 
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEE---APDA 62

Query: 87  DEQREREEADDADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLREMGAVELLSREGEIA 146
           D+    E    AD+D+++      V    +  + RT DPVRMY+REMG VELL+REGEI 
Sbjct: 63  DDLMLAENT--ADEDAAE--AAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118

Query: 147 IAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILD--LDAMLSKDPAPEN 204
           IAKRIE G + +   + E P     ++E    +   E +L +++   +D    +D AP  
Sbjct: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA 178

Query: 205 MEEGAEDDDGEISEKTAGPSFKEEEEPEEESADGDEDEDGAPRARREEDEEEDNTLSLAQ 264
              G+E                      +E  D DEDED       EED ++D+    A 
Sbjct: 179 THVGSE--------------------LSQEDLDDDEDED-------EEDGDDDS----AD 207

Query: 265 MEETLKP-MALEKFATITEIFRAFSKAQESRMVAMANGESLSQKAEDSYHELREQLTAEV 323
            + ++ P +A EKFA +   +        +R    A G S +   E+       +L+   
Sbjct: 208 DDNSIDPELAREKFAELRAQYVV------TRDTIKAKGRSHATAQEEIL-----KLSEVF 256

Query: 324 ESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLA-ERHKVSRKDFLERYMGHELDDAWL 382
           +  +   ++ +YLV+ +     R+      +++L  E+ K+ +K+F+  + G+E  D W 
Sbjct: 257 KQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWF 316

Query: 383 EKVQGLDKKWAAFAAAEGRAVERIRNEVSEIAQATGMSLSEFRRIVNMVQKGEREARIAK 442
                ++K W+         V R   ++ +I + TG+++ + + I   +  GE +AR AK
Sbjct: 317 NAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAK 376

Query: 443 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 502
           KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
Sbjct: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436

Query: 503 QAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRK 562
           QAITRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+AER+ MP +K+RK
Sbjct: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 496

Query: 563 VMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREE 622
           V+KIAKEPIS+ETPIGD+EDSHLGDFIED    +P+D+A   +L+     VLA LT RE 
Sbjct: 497 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREA 556

Query: 623 RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD 678
           +VLRMRFGI MNTD+TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  +RSFLD
Sbjct: 557 KVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612