Pairwise Alignments

Query, 679 a.a., RNA polymerase sigma factor RpoD from Sphingobium sp. HT1-2

Subject, 629 a.a., RNA polymerase sigma factor RpoD from Acinetobacter radioresistens SK82

 Score =  520 bits (1340), Expect = e-152
 Identities = 316/665 (47%), Positives = 410/665 (61%), Gaps = 60/665 (9%)

Query: 28  ASVKKLIARAKKRGYITYDELNDALPQDQMSSEQIEDIMSALNEMGVNIVENEEASEDGD 87
           + V  LI+R K++GY+TY E+ND LP     SEQIEDI+  L ++G+ + E    S+D  
Sbjct: 9   SQVAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHERAPESDDAM 68

Query: 88  EQREREEADDADDDSSDDDGPKLVTEKKKETVDRTDDPVRMYLREMGAVELLSREGEIAI 147
            +   E AD+  ++ +       V    +    RT DPVRMY+REMG VELL+REGEI+I
Sbjct: 69  FEDNAEAADEVAEEEA-----AAVLASVENEPGRTTDPVRMYMREMGTVELLTREGEISI 123

Query: 148 AKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILD--LDAMLSKDPAPENM 205
           AKRIE G   ++  +   P     +++       GE +L +IL   LD   S +  PE +
Sbjct: 124 AKRIEEGIRDVLHSIAYWPNAVEVVLKEYKDYQEGERRLADILSGYLDPE-SDEEIPEVI 182

Query: 206 EEGA--EDDDGEISEKTAGPSFKEEEEPEEES-ADGDEDEDGAPRARREEDEEEDNTLSL 262
           E+    ED+D   S+ T      ++EE EEES +D D + D  P      D E       
Sbjct: 183 EDAVLEEDEDETASKSTKEVKLDDDEEEEEESESDDDSEADSGP------DPE------- 229

Query: 263 AQMEETLKPMALEKFATITEIFRAFSKAQESRMVAMANG-ESLSQKAEDSYHELREQLTA 321
                    +A  +F  +  ++      QE++ V   +G +S   KA        E L +
Sbjct: 230 ---------IAKVRFTELETVW------QETKSVIEKHGRDSAEAKAA------LEALAS 268

Query: 322 EVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLAERH-KVSRKDFLERYMGHELDDA 380
                +F  +  + + + +   + ++     +++R A R  ++ R  F   + G E +  
Sbjct: 269 VFMMFKFTPRLFDIISEMIRGTHEQIRTSEREIMRYAVRRGRMDRTQFRTSFPGQESNPG 328

Query: 381 WLEKVQGLDKKWAAFAAAEGRAVERIRNEV-------SEIAQATGMSLSEFRRIVNMVQK 433
           WL      D++ A  +      +E++R +V       ++I +  G+++ + + I   +  
Sbjct: 329 WL------DEQMAKASPDIKGHLEKVRPDVLAFQQKIADIEKELGLNVIDIKDISKRMAI 382

Query: 434 GEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 493
           GE +AR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
Sbjct: 383 GEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 442

Query: 494 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERL 553
           STYATWWIRQAITRSIADQARTIRIPVHMIETINK+ R SRQ L E GREPTPEE+ ERL
Sbjct: 443 STYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERL 502

Query: 554 SMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV 613
            M   KVRKV+KIAKEPIS+ETPIGD+EDSHLGDFIED+N   PVDAA    LKE    V
Sbjct: 503 EMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQNITSPVDAATSEGLKEATREV 562

Query: 614 LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKM 673
           L +LT RE +VL+MRFGI M TDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  +
Sbjct: 563 LENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHL 622

Query: 674 RSFLD 678
           RSFL+
Sbjct: 623 RSFLE 627