Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 59.7 bits (143), Expect = 3e-14
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 42  DAEDLLQDMWMK-LEAKDLGPVADPLPYLYRMANNLMLDRYRSATRRERREQDWAEGAGG 100
           DA D+  D +++ L  +    + +P  YL  +A  L++DRYR     +  +Q  AE    
Sbjct: 34  DAADVAHDTFVRILGGRHAAQILEPRDYLATIARGLVIDRYRRHAIEQAYKQTLAERPDA 93

Query: 101 VMADPNDDLAVDERMILNQRLEQARGILADLGPRVELVFRRFRIEGVGQRLIAEELGVSL 160
                 D   + E ++   +       LA LG R   +F   ++EG+  + IA+EL VSL
Sbjct: 94  TAISEEDKAIIIETLVAVDKA------LAGLGERARRIFMLSQVEGLTYQQIADELQVSL 147

Query: 161 TTVEKDLQKAYRAMLALKQSL 181
           TTV+K + +A      +  SL
Sbjct: 148 TTVKKHMIRALTECSLIMASL 168