Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 24  FQNRAALLRFLRARGAGED--AEDLLQDMWMKLEAKDLGPVADPLP-YLYRMANNLMLDR 80
           F   A  LR   AR   +   A DL+Q+ +++L  K  G   D    YLYR A+NL++D 
Sbjct: 10  FLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLIDH 69

Query: 81  YRSATRRERREQDWAEGAGGVMADPNDDLAVDERMILNQRLEQA-RGILADLGPRVELVF 139
            R   RR+             +A+  D++A  E   + Q+  QA +  LA+L  R + +F
Sbjct: 70  IRQEARRKTDAVPHE-----ALAEIEDEVAGLEAQAMAQQQRQALKQALAELPERTQQIF 124

Query: 140 RRFRIEGVGQRLIAEELGVSLTTVEKDLQKA 170
           R  RIEG+    +A  L +S ++V+K L KA
Sbjct: 125 RLNRIEGMTHAQVARHLDISDSSVQKHLAKA 155