Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 54.7 bits (130), Expect = 8e-13
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 25/154 (16%)

Query: 30  LLRFLRAR-GAGEDAEDLLQDMWMK-LEAKDLGPVADPLPYLYRMANNLMLDRYRSATRR 87
           L+ FL A+ G  + AED++ D +++ LE     P+  P  +LYR A NL++D +R    R
Sbjct: 9   LVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVIDGHRRNALR 68

Query: 88  ERREQDWAEGAGGVMADPNDDLAVDERMILN---------QRLEQARGILADLGPRVELV 138
           +               +P D L  +ER   +         QRLE     LA+L P     
Sbjct: 69  Q--------------VEPLDVLDAEERFASSSPHTHHDHGQRLELLERALAELPPACRDS 114

Query: 139 FRRFRIEGVGQRLIAEELGVSLTTVEKDLQKAYR 172
           F   ++EG+    IAE L +S   VEK +  A +
Sbjct: 115 FLLRKLEGLTHLQIAERLSISRAMVEKHIVNAMK 148