Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 166 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 52.4 bits (124), Expect = 4e-12
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 23  FFQNRAALL----RFLRARGAGEDAEDLLQDMWMKLEAKDLGPVADPLPYLYRMANNLML 78
           FF++   L+    R LR R   + AEDL  D ++++       V  P  YL++ A N+ +
Sbjct: 11  FFEHYEELIGTWTRRLRNR---QQAEDLAHDTFVRVLESKSSEVEQPRAYLHQTARNIAV 67

Query: 79  DRYRSATRRERREQDWAEGAGGVMADPNDDLAVDERMILNQRLEQARGILADLGPRVELV 138
           D YR   RRE    +  +       DP      +  M   Q  +     L++L      +
Sbjct: 68  DAYRREDRREAITLEAFDQRSPNSGDP------EHFMHAIQLADSIERALSELPLNCRKI 121

Query: 139 FRRFRIEGVGQRLIAEELGVSLTTVEKDLQKAYR 172
           F   +IEG+ Q+ IAE LG+S   VEK + +  R
Sbjct: 122 FIWQKIEGLTQQEIAERLGLSKNMVEKYMIRTLR 155