Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 10/158 (6%)

Query: 22  IFFQNRAALLRFLRAR-GAGEDAEDLLQDMWMKLEAKDLGPVADPLPYLYRMANNLMLDR 80
           +F   R+ +   +  R G    A DL+QD++++   + L  V +   YL R A N+ +D 
Sbjct: 27  VFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQVEELSTYLLRCAGNIAIDH 86

Query: 81  YRSATRRERREQDWAEGAGGVMADPNDDLAVDERMIL--NQRLEQARGILADLGPRVELV 138
            RS   R R  + W       + +  D+   + +  L     L      L  L  R   +
Sbjct: 87  LRSEGARARSSEGW-------LPEQQDNQGSEPQAALEAGNDLRHVEAALRSLPERTRQI 139

Query: 139 FRRFRIEGVGQRLIAEELGVSLTTVEKDLQKAYRAMLA 176
           F   RI G     IA+ +G+S + VEK + +A  A  A
Sbjct: 140 FLLNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEACKA 177