Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 58.5 bits (140), Expect = 6e-14
 Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 10/162 (6%)

Query: 12  TTGMATGLSAIFFQNRAALLRFLRAR-GAGEDAEDLLQDMWMKL-EAKDLGPVADPLPYL 69
           T+ + + +  ++  +   L  +LR R G    A DL QD +M+L +A++   + +P  +L
Sbjct: 8   TSALTSTVEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFL 67

Query: 70  YRMANNLMLDRYRSATRRERREQDWAEGAGGVMADPNDDLAVDE-RMILNQRLEQARGIL 128
             +A  ++ + +R    R+  E+ + +    V   P +    +E + I+ + L     +L
Sbjct: 68  ATVAKRVLCNHFR----RQELERAYLQALAQV---PEEVAPCEEQKAIIFETLLALDHLL 120

Query: 129 ADLGPRVELVFRRFRIEGVGQRLIAEELGVSLTTVEKDLQKA 170
             L P V+  F   +++G+GQ  IA ELG+SL TV++ L KA
Sbjct: 121 DGLPPLVKRAFLLAQVDGLGQGEIARELGISLATVKRYLNKA 162