Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 59.3 bits (142), Expect = 3e-14
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 9/146 (6%)

Query: 30  LLRFLRAR-GAGEDAEDLLQDMWMK-LEAKDLGPVADPLPYLYRMANNLMLDRYRSATRR 87
           L+ FL AR G+ + AED+  D +++ LE      +  P  +LYR A NL++DR+R    R
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 88  ERREQDWAEGAGGV-MADPNDDLAVDERMILNQRLEQARGILADLGPRVELVFRRFRIEG 146
           +    D  +    +  ++   DL +D+R+ L Q+       L +L       F   +IEG
Sbjct: 68  QAEPLDALDADSRLHSSELQHDLQLDQRLALMQKA------LDELSRPCRDSFLLRKIEG 121

Query: 147 VGQRLIAEELGVSLTTVEKDLQKAYR 172
           +  + IAE LG+S + VEK +  A +
Sbjct: 122 LSHQQIAERLGISRSLVEKHIVNAMK 147