Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score = 54.7 bits (130), Expect = 8e-13
 Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 10/147 (6%)

Query: 35  RARGAGEDAEDLLQDMWMKLEAKDLGPVA--DPLPYLYRMANNLMLDRYRSATRRERREQ 92
           R  G   DA DL  D +++L ++   P    +P   L  +A  L++DR+R    R+  E+
Sbjct: 29  RKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLTHIAKGLVVDRWR----RQDVER 84

Query: 93  DWAEGAGGVMADPNDDLAVDE-RMILNQRLEQARGILADLGPRVELVFRRFRIEGVGQRL 151
            + E    +   P  ++   E R ++ + L +   +L D+  RV  VF   +++G+    
Sbjct: 85  AYLEAIAHL---PQPEVPSPETRWLILETLYRIDAMLRDMPARVRQVFLLSQLDGLTYAQ 141

Query: 152 IAEELGVSLTTVEKDLQKAYRAMLALK 178
           IAE+L VSL T+++D++ A+ A L+++
Sbjct: 142 IAEQLQVSLITIKRDMRTAFLACLSIE 168