Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 74.7 bits (182), Expect = 8e-19
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 21  AIFFQNRAALLR-FLRAR-GAGEDAEDLLQDMWMKL-EAKDLGPVADPLPYLYRMANNLM 77
           A+ +Q+    LR +LR+R G  E A DL QD +++L  A+ + P+ +P  YL  +A  LM
Sbjct: 13  ALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGLM 72

Query: 78  LDRYRSATRRERREQDWAEGAGGVMADPNDDLAVDE-RMILNQRLEQARGILADLGPRVE 136
           +D++R    R   E+ + EG   +   P  ++  +E ++++   LE+    L  L PRV 
Sbjct: 73  IDQFR----RRALERAYQEGLAHL---PEAEVPSEEDKLVILDSLERLDRALQQLKPRVR 125

Query: 137 LVFRRFRIEGVGQRLIAEELGVSLTTVEKDLQKAYRAMLALK 178
             F   +++G+    +A+ LGVS  TVE+DL KA  A   L+
Sbjct: 126 QAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGACYRLR 167