Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 35  RARGAGEDAEDLLQDMWMKLEAKD--LGPVADPLPYLYRMANNLMLDRYRSATRRERREQ 92
           R  G   DA +L QD++++L +K            YL RM+ N  +D +R    R R EQ
Sbjct: 31  RKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHARAYLGRMSRNACVDFWR----RRRVEQ 86

Query: 93  DWAEGAGGVMADPNDDLA--VDERMILNQRLEQARGILADLGPRVELVFRRFRIEGVGQR 150
            + E    V+A   + LA  ++ + ++ + LEQ + +   +  RV   F   +++G+ QR
Sbjct: 87  AYLE----VLAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQRVAEAFSMAQLQGMKQR 142

Query: 151 LIAEELGVSLTTVEKDLQKAYRAMLALKQSLD 182
            IAE+LGVS  +V   L +A    L L+  LD
Sbjct: 143 EIAEQLGVSERSVNSYLAQAMYQCLLLEAELD 174