Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 196 a.a., putative RNA polymerase sigma factor FecI from Alteromonas macleodii MIT1002

 Score = 45.8 bits (107), Expect = 5e-10
 Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 10/161 (6%)

Query: 17  TGLSAIFFQNRAALLRFLRARGAGEDAEDLLQDMWMKL-EAKDLGPVADPLPYLYRMANN 75
           T +   +   R ++ + L      ++ +D+LQD +++L +AK    + +P  +L++ A N
Sbjct: 5   TAIHNAYMSARGSMAKMLSRLVPPKEVDDILQDTYVRLCQAKSTEHIKEPKSFLFKTAKN 64

Query: 76  LMLDRYRSATRRERREQDWAEGAGGVMADPNDDLAVDERMILNQRLEQARGILAD----L 131
           L  D  + A    R   D  E A  + +  N    V++    N   +Q   +  D    L
Sbjct: 65  LAYDHLKRA--ETRMVDDSVEVAAALESAIN---GVEDETFHNNATQQEFKLFCDAVRAL 119

Query: 132 GPRVELVFRRFRIEGVGQRLIAEELGVSLTTVEKDLQKAYR 172
             +    F   ++ G   + IA+EL +S  TVEK + +  +
Sbjct: 120 PKQCRRAFVLKKVYGYSLKEIAQELEISEKTVEKHIAEGIK 160