Pairwise Alignments

Query, 240 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

Subject, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

 Score =  182 bits (463), Expect = 1e-50
 Identities = 96/188 (51%), Positives = 119/188 (63%), Gaps = 7/188 (3%)

Query: 6   PLAPYNAKRDFSRTREPRGKVG----KTGGRSFVVQKHAATRLHWDFRLEIDGVLKSWAV 61
           PL+ YN KRDF  T EP G       K    SFV+QKH A  LH+DFRLE+DGVL SWAV
Sbjct: 4   PLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSWAV 63

Query: 62  TKGPSLDPADKRLAVRTEDHPLDYGAFEGNIPKGEYGGGSVMLWDRGTWEPIPGKRADDL 121
            KGPSLDP+ KRLAV  EDHPL YG FEG+IP G+YG G V++WDRG W+P    R    
Sbjct: 64  PKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPR-KAY 122

Query: 122 KDGHLHFILHGERMKGEWLLVRMKGRPSEKRENWLLRKVEDDHA--SDSEDLVGHALTSI 179
             G L F L GE++ G+W LVR + + S  +E WLL K +D  A  +D  D+V     S+
Sbjct: 123 AAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNSV 182

Query: 180 LTARSMAQ 187
           L+  S+ +
Sbjct: 183 LSDASVGK 190