Pairwise Alignments

Query, 240 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  173 bits (439), Expect = 9e-48
 Identities = 101/216 (46%), Positives = 134/216 (62%), Gaps = 12/216 (5%)

Query: 4   ADPLAPYNAKRDFSRTREPRGKVGKTGGRS----FVVQKHAATRLHWDFRLEIDGVLKSW 59
           A PL  Y  KRDF+ T EP GK  K G R+    F +QKH A+ LH+DFRLE+DG LKSW
Sbjct: 2   AKPLQEYARKRDFNATPEPSGK-RKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW 60

Query: 60  AVTKGPSLDPADKRLAVRTEDHPLDYGAFEGNIPKGEYGGGSVMLWDRGTWEPIPGKRAD 119
           A+ KGPSLDP  +RLAV  EDHPLDY  FEG+IP+G YG G V++WDRG WEP  G   +
Sbjct: 61  AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEP-EGDAHE 119

Query: 120 DLKDGHLHFILHGERMKGEWLLVRMKGRPSEKRENWLLRKVEDDHA-SDSEDLVGHAL-T 177
               G L F L GE++ G W L R     + K+E W+L K  D  A S++E  +  AL  
Sbjct: 120 AYAKGKLRFRLLGEKLGGVWNLFRT--HLAGKKEQWMLVKSHDAQACSETEYSIVEALPD 177

Query: 178 SILTARSMAQIQADRDGTQSLKGAKGKAFADKMQAA 213
           S+L+ R++   ++      + + ++ +  ADK+QAA
Sbjct: 178 SVLSERTLVPCKSAAKKATAPRSSRKR--ADKVQAA 211