Pairwise Alignments

Query, 430 a.a., Transposase, IS110 and IS111A family from Sphingobium sp. HT1-2

Subject, 321 a.a., transposase from Pseudomonas putida KT2440

 Score = 47.8 bits (112), Expect = 5e-10
 Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 9/126 (7%)

Query: 282 LRMIPGIGPINALTILAEAGDLR-RFSHHRQFLKFCGLDLATCQSGMFRGRTKLSKYGNA 340
           ++ +PG+G + A  ++     +R  F +   F+ + G+D+   QSG + GR KLSK G++
Sbjct: 193 VQRLPGVGFLTAAGLVMSF--MRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS 250

Query: 341 RLRRTFWMATQVAIRQRDNSFRDKLGRYVAGYPNDPDRRRKAMTALTAKMARVAHAVIKT 400
            +RR  + A+    R           +Y A +     +  +A+  L  ++AR+A  +++ 
Sbjct: 251 EVRRLLYNASMSGSRTA------TWKQYYAHHQARGKKTTQALVILARRLARLAFGLMRH 304

Query: 401 GTEYRP 406
             +++P
Sbjct: 305 QADWKP 310



 Score = 33.9 bits (76), Expect = 7e-06
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 54  LTIIGKPVIVGFEATGNYHRTLAHRLLSAGFELRLISSVALARTREALHNGWDKNDSKDA 113
           L  + K   +  EAT  YH  +A +  +AGF + +I  + L++ RE++     K D+ DA
Sbjct: 43  LKTLPKGSALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIR-AKTDAHDA 101

Query: 114 QVILHML--RIGATQRYVDPLAAGINDLQ 140
            ++   L    G+ + +  P  AG  ++Q
Sbjct: 102 ALLARFLSNERGSLKAWTPP-PAGHREIQ 129