Pairwise Alignments

Query, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

 Score =  283 bits (723), Expect = 1e-80
 Identities = 168/466 (36%), Positives = 248/466 (53%), Gaps = 11/466 (2%)

Query: 11  LIDDEPAQRRLVSALAARAGWRTIFASDAETALATLGTQDGIQLDAVLIDQWSPDFDPAD 70
           ++DD+ + R ++     + G  T     A+  ++ L  Q   Q D ++ D   P     D
Sbjct: 9   IVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQ---QPDVIISDIRMPGASGLD 65

Query: 71  LIGDIHAQRPALPILVLTAHNSVAVAVQAMRAGATDYLSKPIAPERLLAALNATLEGNVR 130
           L+  I  Q P LP++++TAH+ +  AV + + GA +YL KP   +  +A +      N  
Sbjct: 66  LLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVALVK---RANQH 122

Query: 131 GELRPLTEKISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVGKDVVARAI 190
            + +   E   A     +++G AP  +       + + + + VLI GESG GK++VA A+
Sbjct: 123 AQEQQNQEAPPALTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHAL 182

Query: 191 HAASPRHKQAMVTVNCGAIPANLVESELFGHERGAFTGAFDRHVGKFLSADMGTIFLDEV 250
           H  SPR     + +N  AIP +L+ESELFGHE+GAFTGA +   G+F  AD GT+FLDE+
Sbjct: 183 HRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEI 242

Query: 251 SEMPLDAQVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRFREDLYYRL 310
            +MP D Q +LLRVL DGE   +G   PV VDVR+IAAT++ L   + AG+FREDL++RL
Sbjct: 243 GDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRL 302

Query: 311 NVVQLTVPPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDWPGNVRQLQ 370
           NV+++ +P + +R  DIP L RH L+R A +  +    L  +    L    WPGNVRQL+
Sbjct: 303 NVIRIHIPRMSDRREDIPTLARHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLE 362

Query: 371 NALFRAAVLCEGDALTPHDFPQVAAHILSRGASGPRQRAAATPPREAAGITLFEGDGHVR 430
           N      V+  G  +   D P     +    A       A    R+ A   L  G  ++ 
Sbjct: 363 NTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQAL---RQWADQALARGQSNLL 419

Query: 431 QLA--EIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAELGI 474
             A    E  +I  A+ H  GR  + A  LG GR+TL RK+ ELG+
Sbjct: 420 DSAVPAFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGM 465