Pairwise Alignments

Query, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  316 bits (810), Expect = 9e-91
 Identities = 196/464 (42%), Positives = 259/464 (55%), Gaps = 30/464 (6%)

Query: 9   LMLIDDEPAQRRLVSALAARAGWRTIFASDAETALATLGTQDGIQLDAVLIDQWSPDFDP 68
           ++L++D+   R+ +       G+       AE AL  +  +D   L  V+ D   P  D 
Sbjct: 5   VLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAV-LEDAFSL--VVSDVNMPGMDG 61

Query: 69  ADLIGDIHAQRPALPILVLTAHNSVAVAVQAMRAGATDYLSKPIAPERLLAALNATLEGN 128
             L+  +  Q+P LP+L++TAH +V  AV+AMR GA DYL KP  P+ LL  +     G 
Sbjct: 62  HQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVERHAAGR 121

Query: 129 VRGELRPLTEKISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVGKDVVAR 188
           V GE  P              V   P  R  L +AA+ AR+   VLI GESG GK+V+AR
Sbjct: 122 VTGEEGP--------------VACEPASRQLLELAARVARSDSTVLISGESGTGKEVLAR 167

Query: 189 AIHAASPRHKQAMVTVNCGAIPANLVESELFGHERGAFTGAFDRHVGKFLSADMGTIFLD 248
            IH  SPR  Q  V +NC AIP N++E+ LFGHE+GAFTGA     GKF  A+ GT+ LD
Sbjct: 168 YIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLD 227

Query: 249 EVSEMPLDAQVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRFREDLYY 308
           E+SEMP+  Q KLLRVLQ+ EV+ +G R+P+ +D+RV+A TN+ L+ E+ AGRFREDLYY
Sbjct: 228 EISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYY 287

Query: 309 RLNVVQLTVPPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDWPGNVRQ 368
           RL+V  L   PLRER GDI  L   LLAR   +     + L+  A A L  + WPGNVR+
Sbjct: 288 RLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRE 347

Query: 369 LQNALFRAAVLCEGDALTPHDFPQVAAHILSRGASGPRQRAAATPPREAAGITLFEGDGH 428
           L NAL RA +L +G  +   DF    A  LS G     +  A     +A G+    GD  
Sbjct: 348 LDNALQRALILQQGGVIEAADFCLAGAIPLSAGTEPSLEVVA-----DAGGL----GDDM 398

Query: 429 VRQLAEIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAEL 472
            R   ++  D +R      RGR  E A RLGI   TL  KLA++
Sbjct: 399 RRHEYQMIIDTLRAE----RGRRKEAAERLGISPRTLRYKLAQM 438