Pairwise Alignments

Query, 517 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Sphingobium sp. HT1-2

Subject, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

 Score = 89.0 bits (219), Expect = 3e-22
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 274 LDLAESSGLATTLAQPNLTALSGETASFLAGGEYPYTVNNGPSSGNSIQFKQYGVQLAFT 333
           L   E SG    ++QP +     ETA  L G E PY      S   S+ F++  + L  T
Sbjct: 245 LSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ-ETSQSGATSVSFREASLSLEVT 303

Query: 334 PTVLADGRISLRVRPTVSSLDF-SVSSTVPALKSRTAETTVELGSGQGFMIAGLLNNETG 392
           P +  D ++ + VR T    D+ +  + VP ++       V +  G+  +I G+ +    
Sbjct: 304 PQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQN 363

Query: 393 NTVNKVPGLGNIPVLGSLFKSRSFQRNETELVIVVTPYLV 432
           N V+KVP  G++P +G LF+  + Q  ++EL++ +TP ++
Sbjct: 364 NVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 403



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 105 GKVLFSGTVRVGNNLTTIDDMLRLAMPGANIAVNKMNGMVLLTGTIKAPEDAAEAERLTQ 164
           G  L+   +R G  L  +D  L L   G++I +  + G VLL   + A E +   E ++Q
Sbjct: 203 GGPLYGEKLRPGKELF-VD--LGLERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQ 259

Query: 165 AFVGKETTVVSRLLMAT--PLQVMLQVKIAEVS 195
             V       +R+L  T  P Q   Q     VS
Sbjct: 260 PKVVTADKETARILKGTEVPYQETSQSGATSVS 292