Pairwise Alignments

Query, 395 a.a., Conjugative transfer protein TrbI from Sphingobium sp. HT1-2

Subject, 377 a.a., component of type IV secretion system from Agrobacterium fabrum C58

 Score = 70.9 bits (172), Expect = 6e-17
 Identities = 73/301 (24%), Positives = 117/301 (38%), Gaps = 35/301 (11%)

Query: 96  PLPGDLGRPILRAQQRVQDAGTPAPADDAEARRQQRLAQIQ----AARESGLLVQVAAGP 151
           P P D+      AQ+ VQ    P PA     R + R  +       + + G   +V  G 
Sbjct: 75  PAPIDVTLDPPAAQEAVQPTAPP-PARSEPERHEPRPEETPIFAYTSGDQGTSKRVQQGE 133

Query: 152 ------GSPSGTPRTSTEGSTENPAT----PAETSATRKERFAKARDDGPDFNPHGLVPP 201
                 G+   +P    E S EN  +    P E   TR           PDF        
Sbjct: 134 TDRRREGNGEDSPLPKVEVSAENDLSIRMKPTELQPTRATLLPH-----PDF-------- 180

Query: 202 VSPNMLLAGSVIAASFITGLNSDLPGMVTAQVTQNAYDTVTGRILLIPQGSRLVGKYDSV 261
               M+  G++I     T +++ L G V   +  +   T T  ++L+ +G+ +VG+    
Sbjct: 181 ----MVTEGTIIPCILQTAIDTSLAGYVKCVLPWDVRGT-TNNVVLLDRGTTVVGEIQRG 235

Query: 262 VAFGQKRALVVWQRLILPDGSSVRLDNMPATDPSGYAGLSDKVDFHTWSLLKGVAIATLL 321
           +  G  R  V+W R   PD + + L + P+ D  G +GL   VD H W    G  + +++
Sbjct: 236 LQQGDARVFVLWDRAETPDHAMISLAS-PSADELGRSGLPGTVDNHFWQRFSGAMLLSVV 294

Query: 322 -GVGSELSIDGESDLVEAMRQSAQTSTSRAGDQITQRNLDVQPTITVRPGAPVRVLVTRD 380
            G     S    S        S Q +  +  D   +  +++ PT+    G  V + V RD
Sbjct: 295 QGAFQAASTYAGSSGGGTSFNSVQNNGEQTADTALKATINIPPTLKKNQGDTVSIFVARD 354

Query: 381 L 381
           L
Sbjct: 355 L 355