Pairwise Alignments

Query, 315 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Sphingobium sp. HT1-2

Subject, 325 a.a., Ribosomal RNA small subunit methyltransferase H from Azospirillum sp. SherDot2

 Score =  304 bits (779), Expect = 2e-87
 Identities = 173/308 (56%), Positives = 209/308 (67%), Gaps = 8/308 (2%)

Query: 6   HIPVLLTEVLDALAITPGERHVDGTFGAGGYSSAMA-AAGAQVFAFDRDPDAIREGQALA 64
           HIPVLL EV+ AL+   G  +VDGTFGAGGYS A+  +A  +V   DRDP AI  G+ALA
Sbjct: 8   HIPVLLDEVIAALSPRDGGLYVDGTFGAGGYSRALLQSASCRVIGIDRDPAAIERGRALA 67

Query: 65  DE--KGITLIPGEFSRMEELLAERGVSSVSGITLDIGVSSMQLDRPERGFSFQADGPLDM 122
            E    + +I G F  M+ LLA+ GV +V G+ LD+GVSS Q+D PERGFSF+ DGPLDM
Sbjct: 68  QEFPGRLEVIEGRFGDMDRLLADHGVGTVDGVALDVGVSSPQIDEPERGFSFRFDGPLDM 127

Query: 123 TMSQGGMSAADFLNTAAEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTGQLAAVV 179
            M + G +AAD +NTA E D+AD++Y  GEE  +RRVARAIV AR   P+ERTG+LA ++
Sbjct: 128 RMGRDGPTAADVVNTADESDLADIVYHLGEERMARRVARAIVAARREAPIERTGRLAEII 187

Query: 180 RRALGYKPHDKKDPSTRTFQAIRIHVNRELEELERALEAAEALLEPGGRLAIVTFHSLED 239
           R  +     D  DP+TRTFQA+RIHVN EL EL R L AAE+LL PGGRLA+V+FHSLED
Sbjct: 188 RSVVPKGKGDGIDPATRTFQALRIHVNDELGELRRGLSAAESLLAPGGRLAVVSFHSLED 247

Query: 240 RIVKQFLRKRSGSEAGGSRHLP-EKKAEVAPAFE-KPAKAVKPGETELARNPRARSATLR 297
           R VK FLR+RS      SRH P    A   P+F     K V P E E   NPRARSA LR
Sbjct: 248 REVKAFLRERSSPPPSPSRHTPVTAVAAHHPSFRLLSRKPVDPSEAEARNNPRARSARLR 307

Query: 298 SAVRAGAP 305
           +A R  AP
Sbjct: 308 AAERTEAP 315