Pairwise Alignments

Query, 315 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Sphingobium sp. HT1-2

Subject, 313 a.a., Ribosomal RNA small subunit methyltransferase H from Alteromonas macleodii MIT1002

 Score =  233 bits (593), Expect = 6e-66
 Identities = 139/305 (45%), Positives = 194/305 (63%), Gaps = 14/305 (4%)

Query: 6   HIPVLLTEVLDALAITPGERHVDGTFGAGGYSSAMAAA---GAQVFAFDRDPDAIREGQA 62
           HI VLL E ++ALAI P   ++D TFG GG+S+ +  A     ++ AFDRDP AI+  + 
Sbjct: 9   HISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQAIKAAER 68

Query: 63  LADEKGITLIPGEFSRMEELLAERGVSS-VSGITLDIGVSSMQLDRPERGFSFQADGPLD 121
            AD+K  ++I   F  M E +   G++  + G+ +D+GVSS QLD  ERGFSF  DGPLD
Sbjct: 69  FADDKRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDGPLD 128

Query: 122 MTMSQG-GMSAADFLNTAAEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTGQLAA 177
           M M    G SAAD+L  A E+DI  VI  +GEE   +R+A AIV+ R   P+ RT QLA 
Sbjct: 129 MRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKETPITRTAQLAK 188

Query: 178 VVRRALGYKPHDK-KDPSTRTFQAIRIHVNRELEELERALEAAEALLEPGGRLAIVTFHS 236
           ++  A+  K  DK K P+TR FQ IRI++N ELE+L   L+AA  +L   GRLA+++FHS
Sbjct: 189 IIDEAVPVK--DKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLAVISFHS 246

Query: 237 LEDRIVKQFLRKRSGSEAGGSRHLPEKKAEV--APAFEKPAKAVKPGETELARNPRARSA 294
           LEDR+VK+F++ +S  ++    +LP  +AE+      +   KA+KP E E+A N R+RS+
Sbjct: 247 LEDRLVKRFIKDQSKGKS-VPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNVRSRSS 305

Query: 295 TLRSA 299
            LR A
Sbjct: 306 VLRVA 310