Pairwise Alignments

Query, 480 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6- diaminopimelate ligase (EC 6.3.2.13) from Sphingobium sp. HT1-2

Subject, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 91/375 (24%), Positives = 144/375 (38%), Gaps = 19/375 (5%)

Query: 1   MRLGSLIEELGVEVGGNTGLDTSVTGFAIDNRKVAPGTIFGAFQGLRVNGEDFIADAVKA 60
           M+   L + L   V  +   D S  G +ID+R + PG +F A  G R +G D++ +    
Sbjct: 5   MKFSELTQALSARVLSS---DCSFDGVSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAK 61

Query: 61  GAVAIVARPEAKVEGAVHIADANPRRLLAQLAARYFAPFPDVTVAVTGTNGKTSTVELAR 120
           GAV  + +          +  A+ R  L QL A   A F +   A+TG++GKT+  EL  
Sbjct: 62  GAVGALVQRAVADSTLPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELLA 121

Query: 121 QLWRMLGHKSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEASSHG 180
            + R  G   A+ G L            L  P+    +  +   +   I +       H 
Sbjct: 122 GVLRTRGPVHATRGNLNNDFGAPLTLLEL-APEHTAAVIELGASRVGEIAYTVALTKPHV 180

Query: 181 LDQYRTEGLPVAAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVGDGGAAVIWADDEWS 240
           +                N    H+   G  +   +AK  +  E +   G AV+  DD+  
Sbjct: 181 V-------------VINNAGTAHVGEFGGPEKIVEAKGEIL-EGLDASGIAVLNLDDKAF 226

Query: 241 DKAIQRATKRGLRVLSVGVQGQALRLANRTPTQLG-QTLEIEADGKIYKVNLPLIGAYQA 299
           +    RA  R +   +V         +N T    G  +  +        V L L+G +  
Sbjct: 227 ETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNV 286

Query: 300 ANALTAAGLVIATGGDTAKVLELLGRVQPVRGRLERAVISKAGAPVYVDYAHTPDGLRAA 359
           ANAL AA    A G     +   LG VQPV+GR    + +     +   Y      + AA
Sbjct: 287 ANALAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSICAA 346

Query: 360 IEALRPHTRGKLIAL 374
           I+ L+     K++ L
Sbjct: 347 IDLLKSFEGRKVLVL 361