Pairwise Alignments

Query, 309 a.a., Conjugative transfer protein TrbB from Sphingobium sp. HT1-2

Subject, 557 a.a., Type II secretion system protein from Pseudomonas putida KT2440

 Score = 54.7 bits (130), Expect = 5e-12
 Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 19/203 (9%)

Query: 54  HAGQPIISAELPPHADGRAGERFEG---VLPPVSSAPCFSIRKPAQRL---HTLAD-YVA 106
           H G+  ++ +  P  DGR   R  G   V   +S+ P     K   RL   H L + +  
Sbjct: 257 HLGRMDVAEKRRPQ-DGRLQSRLPGGGEVELRLSTLPTPFGEKLVLRLFDPHQLQEGFDR 315

Query: 107 DGLMGETVACALRAAVTERLNILVAGGTSSGKT-TLANALLAEMAPENSAVDSRVILIED 165
            GL G+ +A   R     +  ILV G T SGKT TL  +L     P+ +     +  IED
Sbjct: 316 LGLHGQQLAQWQRLLRQRQGIILVTGPTGSGKTSTLYTSLKLLATPQVN-----LCTIED 370

Query: 166 TRELQCPLPDTVALRTRPP-HVAMTDLVRSTMRLRPDRIIVGEVRGPE-ALDMLKAWNTG 223
             E   P  +   L+ +P   +   + VR+ +R  PD I++GE+R  E AL  ++A  TG
Sbjct: 371 PIERLEPAFNQ--LQVQPALDLGFANAVRAMLRQDPDIIMIGEIRDRETALVAVQAALTG 428

Query: 224 HPGGVATIHANSAAAALTRLEQL 246
           H   ++T+H N A AA+TRL++L
Sbjct: 429 HLV-LSTLHTNDACAAITRLQEL 450