Pairwise Alignments

Query, 199 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 62.4 bits (150), Expect = 4e-15
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 2/150 (1%)

Query: 26  LRSRLRRVVSHRQDVDDIVAECMTRAYANGDIHRAQSGKAFLFQIARNLLIDEARREKIV 85
           L S L   +  RQ  +D+  +   R        + +  +AFL++ A NL++D  RR+ + 
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 86  SLELVAELDVLQTDNSTE--EALHARDELRHLQAILDTLPAQCRRAFILRRVHEKSVKEI 143
             E +  LD     +S+E    L     L  +Q  LD L   CR +F+LR++   S ++I
Sbjct: 68  QAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGLSHQQI 127

Query: 144 AEEMQLSVFTVDKHLTRAAVKIMQAIGQFE 173
           AE + +S   V+KH+  A       + Q+E
Sbjct: 128 AERLGISRSLVEKHIVNAMKHCRVRMRQWE 157